| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16452 | 3:33,046,539-33,047,911 | - | C1H3g04119 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C2H3g12472 | 3:33,054,436-33,059,715 | - | C1H3g17429 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C2H3g08959 | 3:33,059,879-33,062,631 | + | C1H3g24824 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C2H3g16629 | 3:33,072,868-33,079,793 | + | C1H3g08341 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C2H3g28738 | 3:33,082,826-33,084,731 | - | - | CX3g027325 | LOC_Os03g64415 | - | - | Detail |
| C2H4g04859 | 4:3,816-6,198 | + | C1H6g20714 | CX6g041752 | LOC_Os06g01840 | Os06g0107600 | - | Detail |
| C2H4g12961 | 4:6,554-8,915 | - | C1H6g26100 | CX6g042457 | LOC_Os06g01850 | Os06g0107700 | OsLFNR2, LFNR2, FNR | Detail |
| C2H4g04026 | 4:11,903-12,487 | - | - | CX6g041557 | LOC_Os06g01860 | Os06g0107800 | BPH29 | Detail |
| C2H4g21175 | 4:18,091-18,357 | + | C1H6g12285 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g10486 | 4:20,285-22,820 | + | C1H6g01350 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g22338 | 4:23,536-24,372 | - | - | CX6g042160 | LOC_Os06g01920 | Os06g0108600 | - | Detail |
| C2H4g13792 | 4:35,633-38,645 | + | C1H6g04390 | CX6g043309 | LOC_Os06g01934 | - | - | Detail |
| C2H4g26823 | 4:39,446-40,543 | - | - | CX6g041477 | LOC_Os06g01950 | Os06g0109000 | - | Detail |
| C2H4g18764 | 4:42,224-42,691 | - | - | CX6g041174 | LOC_Os06g01960 | Os06g0109100 | - | Detail |
| C2H4g20581 | 4:50,539-52,867 | - | C1H4g20758 | - | - | - | - | Detail |
| C2H4g20979 | 4:57,481-57,976 | - | C1H4g13734 | CX4g036368 | - | - | - | Detail |
| C2H4g12191 | 4:104,764-106,551 | - | C1H4g16035 | - | - | - | - | Detail |
| C2H4g13233 | 4:105,552-108,242 | + | C1H4g00861 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C2H4g05647 | 4:152,099-161,042 | + | C1H4g00970 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C2H4g16448 | 4:162,988-164,816 | - | C1H4g04170 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020629 | 2:20,894,497-20,898,379 | - | C1H2g11737 | C2H2g22746 | LOC_Os02g36710 | Os02g0576700 | OsNAPL6 | Detail |
| CX2g020605 | 2:20,903,106-20,903,438 | + | - | - | LOC_Os02g36730 | Os02g0576900 | - | Detail |
| CX2g020700 | 2:20,905,530-20,908,700 | - | C1H2g13084 | C2H2g05388 | LOC_Os02g36740 | Os02g0577100 | - | Detail |
| CX2g022894 | 2:20,914,971-20,915,132 | - | - | - | LOC_Os01g10030 | Os01g0196800 | - | Detail |
| CX2g024468 | 2:20,917,679-20,920,413 | + | C1H2g10179 | C2H2g15163 | LOC_Os02g36770 | Os02g0577300 | - | Detail |
| CX2g020894 | 2:20,921,885-20,922,739 | - | C1H2g04161 | C2H2g06419 | LOC_Os02g36780 | Os02g0577501 | - | Detail |
| CX2g020544 | 2:20,925,720-20,927,327 | + | C1H2g01989 | C2H2g19554 | LOC_Os02g36810 | Os02g0577700 | - | Detail |
| CX2g021254 | 2:20,933,090-20,934,684 | + | C1H2g01220 | C2H2g03103 | LOC_Os02g36830 | Os02g0578300 | - | Detail |
| CX2g023475 | 2:20,958,473-20,960,030 | + | C1H2g12223 | C2H2g18710 | LOC_Os02g36840 | Os02g0578300 | - | Detail |
| CX2g022311 | 2:20,963,660-20,964,425 | + | C1H2g06701 | C2H2g22661 | LOC_Os02g36845 | Os02g0578366 | - | Detail |
| CX2g019034 | 2:20,964,677-20,965,498 | - | C1H2g12184 | C2H2g25438 | LOC_Os02g36850 | Os02g0578400 | - | Detail |
| CX2g020613 | 2:20,981,706-20,984,185 | + | C1H2g05663 | C2H2g08310 | LOC_Os02g36870 | Os02g0578800 | - | Detail |
| CX2g022645 | 2:20,988,132-20,988,311 | + | - | C2H11g08345 | - | - | - | Detail |
| CX2g019847 | 2:20,992,188-20,992,361 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g021043 | 2:20,996,237-20,997,590 | + | C1H2g22548 | C2H2g22800 | LOC_Os02g36880 | Os02g0579000 | OMTN1, OsNAC1, ONAC027 | Detail |
| CX2g020159 | 2:21,005,081-21,007,233 | + | C1H2g22905 | C2H2g23054 | LOC_Os02g36890 | Os02g0579300 | Os2R_MYB24 | Detail |
| CX2g018961 | 2:21,013,513-21,013,683 | - | - | C2H12g14972 | - | - | - | Detail |
| CX2g019031 | 2:21,026,960-21,027,403 | + | - | - | LOC_Os02g15630 | Os02g0255400 | - | Detail |
| CX2g024371 | 2:21,035,877-21,043,407 | + | C1H2g25560 | C2H2g12567 | LOC_Os02g36924 | Os02g0579600 | OsMADS27 | Detail |
| CX2g019336 | 2:21,046,292-21,046,693 | - | C1H2g25177 | - | - | - | - | Detail |