| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28411 | 3:9,240,532-9,246,895 | - | C1H3g23179 | CX3g027965 | LOC_Os03g18710 | Os03g0298700 | - | Detail |
| C2H3g22544 | 3:9,248,494-9,252,558 | - | C1H3g30107 | CX3g028856 | LOC_Os03g18720 | Os03g0298800 | - | Detail |
| C2H3g15045 | 3:9,264,581-9,265,768 | + | C1H3g08723 | CX3g029271 | LOC_Os03g18740 | Os03g0299200 | - | Detail |
| C2H3g09178 | 3:9,278,981-9,279,901 | - | C1H3g20574 | CX3g025577 | LOC_Os03g18770 | Os03g0299600 | - | Detail |
| C2H3g30408 | 3:9,288,260-9,293,108 | - | C1H3g08338 | CX3g025927 | LOC_Os03g18790 | Os03g0299800 | - | Detail |
| C2H3g01680 | 3:9,300,538-9,303,854 | + | C1H3g29390 | CX3g025303 | LOC_Os03g18810 | Os03g0299900 | - | Detail |
| C2H3g29698 | 3:9,305,262-9,306,608 | - | C1H3g08396 | CX3g025517 | LOC_Os03g18820 | Os03g0300000 | - | Detail |
| C2H3g28163 | 3:9,309,510-9,313,862 | - | C1H3g18508 | CX3g030992 | LOC_Os03g18830 | Os03g0300200 | - | Detail |
| C2H3g21841 | 3:9,313,891-9,319,684 | + | C1H3g23407 | CX3g030790 | LOC_Os03g18840 | Os03g0300300 | - | Detail |
| C2H3g29151 | 3:9,320,346-9,321,399 | + | C1H3g17735 | CX3g027983 | LOC_Os03g18850 | Os03g0300400 | JIOsPR10 | Detail |
| C2H3g16892 | 3:9,323,452-9,325,149 | - | C1H3g06825 | CX3g030884 | LOC_Os03g18860 | Os03g0300500 | - | Detail |
| C2H3g14772 | 3:9,328,774-9,329,751 | - | C1H3g14250 | CX3g030255 | LOC_Os03g18870 | Os03g0300600 | - | Detail |
| C2H3g30255 | 3:9,332,917-9,334,022 | - | C1H3g00200 | CX3g030501 | LOC_Os03g18880 | Os03g0300700 | - | Detail |
| C2H3g17031 | 3:9,339,566-9,341,275 | + | C1H3g08826 | CX3g028981 | LOC_Os03g18890 | Os03g0300900 | - | Detail |
| C2H3g21070 | 3:9,358,176-9,360,191 | + | C1H3g12713 | CX3g030388 | LOC_Os03g18910 | Os03g0301200 | - | Detail |
| C2H3g13460 | 3:9,365,870-9,371,894 | + | C1H3g28323 | CX3g027587 | LOC_Os03g18940 | Os03g0301400 | - | Detail |
| C2H3g01957 | 3:9,374,145-9,376,152 | + | C1H3g10793 | CX3g029287 | LOC_Os03g18950 | Os03g0301500 | - | Detail |
| C2H3g01576 | 3:9,378,347-9,381,434 | + | C1H3g07825 | CX3g028454 | LOC_Os03g18960 | Os03g0301600 | - | Detail |
| C2H3g21248 | 3:9,382,284-9,385,967 | - | C1H3g28727 | CX3g025125 | LOC_Os03g18970 | Os03g0301700 | - | Detail |
| C2H3g22040 | 3:9,391,479-9,397,574 | - | C1H3g15707 | CX3g025499 | LOC_Os03g18980 | Os03g0301800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022264 | 2:20,546,228-20,546,491 | + | - | - | - | - | - | Detail |
| CX2g023226 | 2:20,548,993-20,551,558 | - | C1H2g01402 | C2H2g05039 | LOC_Os02g36190 | Os02g0570700 | - | Detail |
| CX2g024448 | 2:20,560,065-20,560,364 | - | C1H2g04979 | C2H7g12708 | - | - | - | Detail |
| CX2g023024 | 2:20,562,214-20,562,459 | + | - | - | - | - | - | Detail |
| CX2g024634 | 2:20,580,932-20,581,081 | + | - | - | - | - | - | Detail |
| CX2g021593 | 2:20,590,360-20,596,697 | + | C1H2g07162 | C2H2g17098 | LOC_Os02g36210 | Os02g0571100 | OsCPS2, Os-CPS2, OsCyc2, OsCPS2ent | Detail |
| CX2g021871 | 2:20,600,928-20,611,065 | - | C1H2g03952 | C2H2g13289 | LOC_Os02g36220 | Os02g0571300 | OsKSL7 | Detail |
| CX2g020519 | 2:20,615,666-20,615,818 | + | - | - | - | Os09g0414600 | - | Detail |
| CX2g021301 | 2:20,618,689-20,619,354 | + | - | - | - | - | - | Detail |
| CX2g024389 | 2:20,643,187-20,643,423 | - | - | - | - | - | - | Detail |
| CX2g024086 | 2:20,644,906-20,646,387 | - | C1H2g26097 | C2H2g15028 | LOC_Os02g36280 | Os02g0571900 | - | Detail |
| CX2g021366 | 2:20,655,888-20,658,945 | + | C1H2g26668 | C2H2g18750 | LOC_Os02g36300 | Os02g0572200 | - | Detail |
| CX2g018873 | 2:20,659,540-20,660,583 | - | C1H2g17745 | C2H2g09753 | LOC_Os02g36320 | Os02g0572300 | - | Detail |
| CX2g021053 | 2:20,664,041-20,665,159 | - | C1H2g26668 | C2H2g17582 | LOC_Os02g36330 | Os02g0475101 | - | Detail |
| CX2g024208 | 2:20,665,817-20,666,215 | - | - | C2H2g16287 | LOC_Os02g49170 | - | - | Detail |
| CX2g023356 | 2:20,667,361-20,671,490 | - | C1H2g26185 | C2H2g16620 | LOC_Os02g36340 | Os02g0572400 | - | Detail |
| CX2g020691 | 2:20,681,469-20,681,780 | + | - | - | - | - | - | Detail |
| CX2g023112 | 2:20,689,445-20,691,104 | - | C1H2g25932 | C2H2g00545 | LOC_Os02g36350 | Os02g0572600 | - | Detail |
| CX2g023654 | 2:20,702,565-20,703,755 | - | C1H2g10452 | C2H2g01996 | LOC_Os02g36360 | Os02g0572900 | - | Detail |
| CX2g018889 | 2:20,722,198-20,725,035 | + | C1H2g13546 | C2H2g05333 | LOC_Os02g36380 | Os02g0573200 | OsCRY1a, OsCRY1, CRY1a, CRY2 | Detail |