| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g07009 | 1:543,325-548,130 | + | C1H1g25488 | CX1g001513 | LOC_Os01g02090 | Os01g0111200 | - | Detail |
| C2H1g01628 | 1:550,226-551,621 | + | C1H1g01853 | CX1g006966 | - | Os01g0875300 | - | Detail |
| C2H1g24854 | 1:552,255-555,466 | + | C1H1g07786 | CX1g005226 | LOC_Os01g02100 | Os01g0111400 | - | Detail |
| C2H1g19363 | 1:558,023-559,763 | - | C1H1g14088 | CX1g006677 | LOC_Os01g02110 | Os01g0111500 | OsbHLH125, OsRSL1 | Detail |
| C2H1g23948 | 1:568,570-569,710 | + | C1H1g13355 | CX1g005285 | LOC_Os01g02120 | Os01g0111600 | OsMFT2 | Detail |
| C2H1g02582 | 1:570,950-571,168 | + | C1H1g13355 | CX1g005285 | LOC_Os01g02120 | Os01g0111600 | OsMFT2 | Detail |
| C2H1g06750 | 1:572,804-573,340 | - | C1H1g03145 | CX1g000577 | LOC_Os01g02130 | Os01g0111700 | - | Detail |
| C2H1g00548 | 1:576,022-576,357 | + | - | CX1g001204 | LOC_Os01g02139 | Os01g0111800 | - | Detail |
| C2H1g11220 | 1:578,071-578,604 | + | - | CX1g000849 | LOC_Os01g02150 | Os01g0111900 | - | Detail |
| C2H1g25662 | 1:583,706-584,185 | + | - | CX1g005472 | LOC_Os01g02160 | Os01g0112000 | - | Detail |
| C2H1g01302 | 1:589,317-590,438 | - | - | CX1g003752 | LOC_Os01g02170 | Os01g0112100 | - | Detail |
| C2H1g15413 | 1:592,366-595,545 | - | C1H1g19396 | CX1g001772 | LOC_Os01g02180 | Os01g0112300 | - | Detail |
| C2H1g26496 | 1:597,481-598,215 | - | C1H1g12611 | CX1g006294 | LOC_Os01g02190 | Os01g0112400 | - | Detail |
| C2H1g09983 | 1:600,015-603,239 | - | C1H1g15658 | CX1g004936 | LOC_Os01g02200 | Os01g0112500 | - | Detail |
| C2H1g08042 | 1:624,169-628,443 | + | C1H1g24472 | CX1g000403 | LOC_Os01g02250 | Os01g0113150 | - | Detail |
| C2H1g24768 | 1:632,904-635,347 | - | C1H1g25870 | CX1g004864 | LOC_Os01g02290 | Os01g0117100 | - | Detail |
| C2H1g21388 | 1:635,800-637,941 | + | C1H1g08806 | CX1g000582 | LOC_Os01g02300 | Os01g0113300 | - | Detail |
| C2H1g20203 | 1:641,135-643,093 | + | C1H1g10377 | CX1g004500 | LOC_Os01g02310 | Os01g0113350 | MAK1 | Detail |
| C2H1g18634 | 1:643,440-645,870 | - | C1H1g04178 | CX1g000582 | LOC_Os01g02320 | Os01g0113400 | - | Detail |
| C2H1g13637 | 1:645,439-645,711 | + | - | - | - | Os01g0113450 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022264 | 2:20,546,228-20,546,491 | + | - | - | - | - | - | Detail |
| CX2g023226 | 2:20,548,993-20,551,558 | - | C1H2g01402 | C2H2g05039 | LOC_Os02g36190 | Os02g0570700 | - | Detail |
| CX2g024448 | 2:20,560,065-20,560,364 | - | C1H2g04979 | C2H7g12708 | - | - | - | Detail |
| CX2g023024 | 2:20,562,214-20,562,459 | + | - | - | - | - | - | Detail |
| CX2g024634 | 2:20,580,932-20,581,081 | + | - | - | - | - | - | Detail |
| CX2g021593 | 2:20,590,360-20,596,697 | + | C1H2g07162 | C2H2g17098 | LOC_Os02g36210 | Os02g0571100 | OsCPS2, Os-CPS2, OsCyc2, OsCPS2ent | Detail |
| CX2g021871 | 2:20,600,928-20,611,065 | - | C1H2g03952 | C2H2g13289 | LOC_Os02g36220 | Os02g0571300 | OsKSL7 | Detail |
| CX2g020519 | 2:20,615,666-20,615,818 | + | - | - | - | Os09g0414600 | - | Detail |
| CX2g021301 | 2:20,618,689-20,619,354 | + | - | - | - | - | - | Detail |
| CX2g024389 | 2:20,643,187-20,643,423 | - | - | - | - | - | - | Detail |
| CX2g024086 | 2:20,644,906-20,646,387 | - | C1H2g26097 | C2H2g15028 | LOC_Os02g36280 | Os02g0571900 | - | Detail |
| CX2g021366 | 2:20,655,888-20,658,945 | + | C1H2g26668 | C2H2g18750 | LOC_Os02g36300 | Os02g0572200 | - | Detail |
| CX2g018873 | 2:20,659,540-20,660,583 | - | C1H2g17745 | C2H2g09753 | LOC_Os02g36320 | Os02g0572300 | - | Detail |
| CX2g021053 | 2:20,664,041-20,665,159 | - | C1H2g26668 | C2H2g17582 | LOC_Os02g36330 | Os02g0475101 | - | Detail |
| CX2g024208 | 2:20,665,817-20,666,215 | - | - | C2H2g16287 | LOC_Os02g49170 | - | - | Detail |
| CX2g023356 | 2:20,667,361-20,671,490 | - | C1H2g26185 | C2H2g16620 | LOC_Os02g36340 | Os02g0572400 | - | Detail |
| CX2g020691 | 2:20,681,469-20,681,780 | + | - | - | - | - | - | Detail |
| CX2g023112 | 2:20,689,445-20,691,104 | - | C1H2g25932 | C2H2g00545 | LOC_Os02g36350 | Os02g0572600 | - | Detail |
| CX2g023654 | 2:20,702,565-20,703,755 | - | C1H2g10452 | C2H2g01996 | LOC_Os02g36360 | Os02g0572900 | - | Detail |
| CX2g018889 | 2:20,722,198-20,725,035 | + | C1H2g13546 | C2H2g05333 | LOC_Os02g36380 | Os02g0573200 | OsCRY1a, OsCRY1, CRY1a, CRY2 | Detail |