| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16001 | 3:10,173,735-10,175,036 | + | C2H3g05954 | CX3g026260 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| C1H3g07890 | 3:10,192,334-10,193,545 | + | C2H3g08312 | CX3g025491 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| C1H3g20479 | 3:10,200,586-10,201,880 | + | C2H3g29183 | CX3g028957 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| C1H3g31254 | 3:10,203,377-10,209,318 | - | C2H3g10315 | CX3g024974 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| C1H3g27797 | 3:10,209,753-10,214,845 | - | C2H3g15586 | CX3g025701 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |
| C1H3g25597 | 3:10,233,111-10,233,644 | + | C2H3g06773 | CX3g031095 | LOC_Os03g20330 | Os03g0319000 | - | Detail |
| C1H3g29099 | 3:10,242,233-10,246,996 | + | C2H3g23539 | CX3g030494 | LOC_Os03g20340 | Os03g0319100 | - | Detail |
| C1H3g19829 | 3:10,254,192-10,255,623 | + | C2H3g28901 | CX3g028434 | LOC_Os03g20350 | Os03g0319200 | - | Detail |
| C1H3g23043 | 3:10,259,154-10,260,436 | + | C2H3g27412 | CX3g031077 | LOC_Os03g20370 | Os03g0319300 | OsCam1-1, OsCaM1-1, OsCaM1 | Detail |
| C1H3g21490 | 3:10,262,867-10,268,355 | - | C2H3g25279 | CX3g026317 | LOC_Os03g20380 | Os03g0319400 | - | Detail |
| C1H3g25971 | 3:10,281,082-10,284,619 | - | C2H3g09371 | CX3g025212 | LOC_Os03g20410 | Os03g0320000 | OsSIP2 | Detail |
| C1H3g08252 | 3:10,290,492-10,298,627 | - | C2H3g22340 | CX3g029293 | LOC_Os03g20420 | Os03g0320100 | - | Detail |
| C1H3g09342 | 3:10,303,100-10,304,444 | + | C2H3g01972 | CX3g029244 | LOC_Os03g20430 | Os03g0320400 | - | Detail |
| C1H3g07396 | 3:10,310,058-10,310,714 | - | C2H3g13875 | CX3g027813 | LOC_Os03g20440 | Os03g0320600 | - | Detail |
| C1H3g21035 | 3:10,326,442-10,331,578 | + | C2H3g23140 | CX3g030303 | LOC_Os03g20450 | Os03g0320800 | - | Detail |
| C1H3g22135 | 3:10,334,633-10,337,401 | + | C2H3g14660 | CX3g027683 | LOC_Os03g20460 | Os03g0320900 | V2, pt/mtGK | Detail |
| C1H3g27273 | 3:10,338,765-10,341,238 | + | C2H3g12919 | CX3g026494 | LOC_Os03g20470 | Os03g0321000 | - | Detail |
| C1H3g19861 | 3:10,351,468-10,352,613 | + | C2H3g01230 | CX3g029583 | LOC_Os03g20500 | Os03g0321300 | - | Detail |
| C1H3g31579 | 3:10,352,696-10,352,992 | - | C2H3g17781 | - | - | - | - | Detail |
| C1H3g05314 | 3:10,360,363-10,366,269 | - | C2H3g10177 | CX3g030418 | LOC_Os03g20520 | Os03g0321400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022636 | 2:20,127,798-20,128,313 | - | C1H2g18536 | C2H2g30399 | LOC_Os02g35240 | Os02g0558700 | - | Detail |
| CX2g022726 | 2:20,130,629-20,130,781 | + | - | - | - | Os02g0630650 | - | Detail |
| CX2g021445 | 2:20,138,237-20,141,127 | + | C1H2g29418 | C2H2g30329 | LOC_Os02g35300 | Os02g0559300 | - | Detail |
| CX2g022839 | 2:20,141,948-20,144,074 | - | C1H2g18296 | C2H2g07663 | LOC_Os02g35310 | Os02g0559400 | - | Detail |
| CX2g019879 | 2:20,147,640-20,148,077 | - | C1H2g24849 | C2H2g23968 | LOC_Os02g35315 | Os02g0560450 | - | Detail |
| CX2g019263 | 2:20,159,118-20,162,429 | + | C1H2g04292 | C2H2g07152 | LOC_Os02g35320 | Os02g0560700 | - | Detail |
| CX2g021460 | 2:20,166,130-20,167,095 | - | C1H2g09758 | C2H2g27531 | LOC_Os02g35329 | Os02g0560600 | EL5, EL5.3 | Detail |
| CX2g020926 | 2:20,173,045-20,173,653 | - | C1H2g09758 | C2H2g27531 | LOC_Os02g35440 | Os02g0561900 | - | Detail |
| CX2g024333 | 2:20,179,315-20,180,190 | + | C1H2g29582 | C2H2g28464 | LOC_Os02g35450 | Os02g0562100 | XRCC3 | Detail |
| CX2g024829 | 2:20,187,505-20,192,512 | + | C1H2g02101 | C2H2g25054 | LOC_Os02g35470 | Os02g0562300 | - | Detail |
| CX2g023645 | 2:20,193,554-20,196,307 | - | - | C2H2g26588 | LOC_Os02g35480 | Os02g0562400 | - | Detail |
| CX2g022844 | 2:20,198,207-20,202,729 | - | C1H2g13542 | C2H2g08496 | LOC_Os02g35490 | Os02g0562600 | - | Detail |
| CX2g023726 | 2:20,217,436-20,221,475 | + | C1H2g26275 | C2H2g13323 | LOC_Os02g35500 | Os02g0562700 | - | Detail |
| CX2g022313 | 2:20,232,576-20,233,652 | + | C1H2g07639 | C2H2g00364 | LOC_Os02g35530 | Os02g0563000 | - | Detail |
| CX2g020181 | 2:20,263,107-20,264,846 | - | - | - | LOC_Os02g35560 | Os02g0563800 | - | Detail |
| CX2g024419 | 2:20,273,429-20,276,149 | - | C1H2g01238 | C2H2g24813 | LOC_Os02g35590 | Os02g0564000 | OsGST2 | Detail |
| CX2g020609 | 2:20,276,422-20,279,121 | + | C1H2g18288 | C2H2g14395 | LOC_Os02g35600 | Os02g0564100 | - | Detail |
| CX2g024095 | 2:20,280,360-20,280,560 | + | - | C2H2g18420 | LOC_Os02g35610 | Os02g0564200 | - | Detail |
| CX2g019029 | 2:20,282,779-20,284,806 | - | C1H2g08212 | C2H2g23834 | LOC_Os02g35620 | Os02g0564300 | - | Detail |
| CX2g019190 | 2:20,287,945-20,293,504 | + | C1H2g00388 | C2H2g28792 | LOC_Os02g35630 | Os02g0564400 | - | Detail |