| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05621 | 3:9,712,031-9,720,342 | - | C1H3g03825 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C2H3g16168 | 3:9,723,083-9,730,570 | + | C1H3g14624 | CX3g025218 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C2H3g22628 | 3:9,731,143-9,731,921 | + | C1H3g25260 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| C2H3g07392 | 3:9,732,772-9,734,508 | + | C1H3g01414 | CX3g025445 | LOC_Os03g19550 | Os03g0308700 | - | Detail |
| C2H3g00056 | 3:9,735,156-9,740,043 | - | C1H3g19377 | CX3g030908 | LOC_Os03g19560 | Os03g0308800 | - | Detail |
| C2H3g29613 | 3:9,740,992-9,749,186 | - | C1H3g11990 | CX3g028131 | LOC_Os03g19570 | Os03g0308900 | - | Detail |
| C2H3g04332 | 3:9,750,097-9,754,649 | - | C1H3g12362 | CX3g027111 | LOC_Os03g19580 | Os03g0309000 | - | Detail |
| C2H3g27208 | 3:9,762,776-9,770,706 | + | C1H3g01579 | CX3g027710 | LOC_Os03g19590 | Os03g0309200 | PHYB, phyB | Detail |
| C2H3g30389 | 3:9,779,473-9,780,894 | + | C1H3g31344 | - | - | - | - | Detail |
| C2H3g16987 | 3:9,782,100-9,783,703 | - | C1H3g14051 | CX3g026554 | LOC_Os03g19610 | Os03g0309400 | OsPME1 | Detail |
| C2H3g26228 | 3:9,816,316-9,816,658 | + | C1H3g18443 | CX3g028408 | LOC_Os03g19640 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C2H3g16697 | 3:9,820,592-9,820,813 | + | C1H3g11555 | CX3g028766 | - | - | - | Detail |
| C2H3g13080 | 3:9,821,755-9,821,967 | - | C1H3g03110 | - | - | - | - | Detail |
| C2H3g12766 | 3:9,822,694-9,826,576 | + | C1H3g27332 | CX3g028595 | LOC_Os03g19650 | Os03g0309800 | - | Detail |
| C2H3g11631 | 3:9,833,897-9,835,850 | + | C1H3g10972 | CX3g030795 | LOC_Os03g19670 | Os03g0310000 | - | Detail |
| C2H3g08022 | 3:9,838,873-9,840,653 | + | C1H3g01286 | CX3g026374 | LOC_Os03g19680 | Os03g0310400 | - | Detail |
| C2H3g15288 | 3:9,841,884-9,850,957 | + | C1H3g04682 | CX3g030825 | LOC_Os03g19690 | Os03g0310500 | - | Detail |
| C2H3g22353 | 3:9,851,698-9,852,960 | - | C1H3g07093 | CX3g025321 | LOC_Os03g19700 | Os03g0310600 | - | Detail |
| C2H3g16003 | 3:9,862,102-9,862,623 | + | C1H3g20690 | CX3g025589 | LOC_Os03g19720 | Os03g0310800 | - | Detail |
| C2H3g12709 | 3:9,869,680-9,885,448 | + | C1H3g23036 | CX3g026836 | LOC_Os03g19760 | Os03g0311300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022178 | 2:19,017,843-19,019,042 | - | C1H2g14103 | C2H2g10969 | LOC_Os02g33590 | Os02g0539200 | OsPUB33 | Detail |
| CX2g023671 | 2:19,038,557-19,039,390 | + | - | - | - | - | - | Detail |
| CX2g020089 | 2:19,042,244-19,042,988 | + | - | - | - | - | - | Detail |
| CX2g024045 | 2:19,044,816-19,052,686 | + | C1H2g13439 | C2H2g02484 | LOC_Os02g33610 | Os02g0539600 | GRY79 | Detail |
| CX2g022464 | 2:19,059,404-19,062,848 | - | C1H2g29583 | C2H2g06091 | LOC_Os02g33630 | Os02g0539900 | - | Detail |
| CX2g023578 | 2:19,121,079-19,122,596 | + | C1H2g22578 | C2H2g10969 | LOC_Os02g33680 | Os02g0540700 | - | Detail |
| CX2g022926 | 2:19,143,844-19,147,406 | + | C1H2g12544 | C2H2g28169 | LOC_Os02g33710 | Os02g0541325 | - | Detail |
| CX2g023335 | 2:19,151,994-19,152,611 | - | - | - | - | - | - | Detail |
| CX2g022361 | 2:19,159,129-19,163,207 | - | C1H2g02670 | C2H2g10478 | LOC_Os02g33730 | Os02g0541700 | - | Detail |
| CX2g022174 | 2:19,166,203-19,166,595 | + | C1H2g31676 | C2H2g27952 | LOC_Os02g33740 | Os02g0541900 | - | Detail |
| CX2g018878 | 2:19,170,592-19,174,570 | - | C1H2g30293 | C2H2g00187 | LOC_Os02g33750 | Os02g0542200 | - | Detail |
| CX2g023996 | 2:19,183,269-19,187,003 | + | C1H2g03056 | - | LOC_Os02g33770 | Os02g0542400 | OsGTγ-1, OsGTgamma-1 | Detail |
| CX2g023080 | 2:19,187,463-19,188,509 | + | C1H2g07889 | C2H2g23863 | LOC_Os02g33780 | Os02g0542500 | - | Detail |
| CX2g022789 | 2:19,198,369-19,199,395 | - | C1H2g27793 | C2H2g18501 | LOC_Os02g33790 | - | - | Detail |
| CX2g024405 | 2:19,202,145-19,202,489 | - | - | - | LOC_Os02g33800 | - | - | Detail |
| CX2g019174 | 2:19,206,718-19,207,492 | - | C1H2g21560 | C2H2g07033 | LOC_Os02g33820 | Os02g0543000 | - | Detail |
| CX2g020648 | 2:19,210,640-19,213,485 | - | C1H2g07478 | C2H2g22437 | LOC_Os02g33830 | Os02g0543100 | - | Detail |
| CX2g021797 | 2:19,214,092-19,215,573 | + | - | - | LOC_Os02g33840 | Os02g0543200 | - | Detail |
| CX2g023537 | 2:19,221,518-19,224,877 | + | C1H2g21330 | C2H2g26343 | LOC_Os02g33860 | Os02g0543400 | SGW5 | Detail |
| CX2g020736 | 2:19,243,479-19,245,830 | - | C1H2g10313 | C2H2g00010 | LOC_Os02g33890 | Os02g0297200 | - | Detail |