| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20995 | 3:1,725,340-1,727,304 | - | C2H3g08230 | CX3g031140 | LOC_Os03g04120 | Os03g0133500 | - | Detail |
| C1H3g14010 | 3:1,729,023-1,736,073 | - | C2H3g28117 | CX3g028134 | LOC_Os03g04130 | Os03g0133800 | - | Detail |
| C1H3g08215 | 3:1,737,119-1,737,342 | - | C2H3g06102 | - | - | Os03g0130350 | - | Detail |
| C1H3g28278 | 3:1,737,623-1,742,154 | - | C2H3g18012 | CX3g028998 | LOC_Os03g04140 | Os03g0133900 | OsSAT3 | Detail |
| C1H3g03246 | 3:1,745,367-1,749,711 | + | C2H3g09036 | CX3g030226 | LOC_Os03g04169 | Os03g0134300 | - | Detail |
| C1H3g21430 | 3:1,750,410-1,752,390 | - | C2H3g27438 | CX3g030747 | LOC_Os03g04190 | Os03g0134500 | - | Detail |
| C1H3g21849 | 3:1,763,648-1,764,644 | + | C2H3g12826 | CX3g028352 | LOC_Os03g04210 | Os03g0134800 | - | Detail |
| C1H3g16924 | 3:1,765,183-1,766,649 | - | C2H3g04770 | CX3g027728 | LOC_Os03g04220 | Os03g0134900 | - | Detail |
| C1H3g04141 | 3:1,771,450-1,772,677 | - | C2H3g23886 | CX3g027728 | LOC_Os03g04240 | Os03g0135100 | - | Detail |
| C1H3g09964 | 3:1,774,847-1,775,695 | - | C2H3g23080 | CX3g027728 | LOC_Os03g04250 | Os03g0135200 | - | Detail |
| C1H3g28981 | 3:1,777,212-1,778,164 | - | C2H3g08307 | CX3g027728 | LOC_Os03g04260 | Os03g0135300 | - | Detail |
| C1H3g07565 | 3:1,780,257-1,783,136 | - | C2H3g10421 | CX3g030799 | LOC_Os03g04270 | Os03g0135400 | - | Detail |
| C1H3g05387 | 3:1,788,750-1,797,550 | - | C2H3g21011 | CX3g025620 | LOC_Os03g04300 | Os03g0135600 | - | Detail |
| C1H3g28124 | 3:1,801,590-1,803,552 | - | C2H3g13535 | CX3g028533 | LOC_Os03g04310 | Os03g0135700 | - | Detail |
| C1H3g08465 | 3:1,808,577-1,810,150 | - | - | - | LOC_Os03g04320 | - | - | Detail |
| C1H3g13645 | 3:1,810,238-1,814,005 | - | C2H3g10458 | - | LOC_Os03g04320 | Os03g0135800 | - | Detail |
| C1H3g26367 | 3:1,820,654-1,821,745 | + | C2H3g08967 | CX3g028470 | LOC_Os03g04340 | Os03g0136200 | - | Detail |
| C1H3g15385 | 3:1,828,694-1,830,274 | - | C2H3g15188 | CX3g025886 | LOC_Os03g04360 | Os03g0136400 | OsPHT1;7 | Detail |
| C1H3g19324 | 3:1,831,041-1,831,463 | + | C2H3g08585 | - | LOC_Os03g04370 | Os03g0136500 | - | Detail |
| C1H3g07268 | 3:1,831,816-1,832,298 | + | C2H3g18976 | CX3g030982 | LOC_Os03g04380 | Os03g0136600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022178 | 2:19,017,843-19,019,042 | - | C1H2g14103 | C2H2g10969 | LOC_Os02g33590 | Os02g0539200 | OsPUB33 | Detail |
| CX2g023671 | 2:19,038,557-19,039,390 | + | - | - | - | - | - | Detail |
| CX2g020089 | 2:19,042,244-19,042,988 | + | - | - | - | - | - | Detail |
| CX2g024045 | 2:19,044,816-19,052,686 | + | C1H2g13439 | C2H2g02484 | LOC_Os02g33610 | Os02g0539600 | GRY79 | Detail |
| CX2g022464 | 2:19,059,404-19,062,848 | - | C1H2g29583 | C2H2g06091 | LOC_Os02g33630 | Os02g0539900 | - | Detail |
| CX2g023578 | 2:19,121,079-19,122,596 | + | C1H2g22578 | C2H2g10969 | LOC_Os02g33680 | Os02g0540700 | - | Detail |
| CX2g022926 | 2:19,143,844-19,147,406 | + | C1H2g12544 | C2H2g28169 | LOC_Os02g33710 | Os02g0541325 | - | Detail |
| CX2g023335 | 2:19,151,994-19,152,611 | - | - | - | - | - | - | Detail |
| CX2g022361 | 2:19,159,129-19,163,207 | - | C1H2g02670 | C2H2g10478 | LOC_Os02g33730 | Os02g0541700 | - | Detail |
| CX2g022174 | 2:19,166,203-19,166,595 | + | C1H2g31676 | C2H2g27952 | LOC_Os02g33740 | Os02g0541900 | - | Detail |
| CX2g018878 | 2:19,170,592-19,174,570 | - | C1H2g30293 | C2H2g00187 | LOC_Os02g33750 | Os02g0542200 | - | Detail |
| CX2g023996 | 2:19,183,269-19,187,003 | + | C1H2g03056 | - | LOC_Os02g33770 | Os02g0542400 | OsGTγ-1, OsGTgamma-1 | Detail |
| CX2g023080 | 2:19,187,463-19,188,509 | + | C1H2g07889 | C2H2g23863 | LOC_Os02g33780 | Os02g0542500 | - | Detail |
| CX2g022789 | 2:19,198,369-19,199,395 | - | C1H2g27793 | C2H2g18501 | LOC_Os02g33790 | - | - | Detail |
| CX2g024405 | 2:19,202,145-19,202,489 | - | - | - | LOC_Os02g33800 | - | - | Detail |
| CX2g019174 | 2:19,206,718-19,207,492 | - | C1H2g21560 | C2H2g07033 | LOC_Os02g33820 | Os02g0543000 | - | Detail |
| CX2g020648 | 2:19,210,640-19,213,485 | - | C1H2g07478 | C2H2g22437 | LOC_Os02g33830 | Os02g0543100 | - | Detail |
| CX2g021797 | 2:19,214,092-19,215,573 | + | - | - | LOC_Os02g33840 | Os02g0543200 | - | Detail |
| CX2g023537 | 2:19,221,518-19,224,877 | + | C1H2g21330 | C2H2g26343 | LOC_Os02g33860 | Os02g0543400 | SGW5 | Detail |
| CX2g020736 | 2:19,243,479-19,245,830 | - | C1H2g10313 | C2H2g00010 | LOC_Os02g33890 | Os02g0297200 | - | Detail |