| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31035 | 3:10,734,431-10,738,180 | - | C2H3g29789 | CX3g027049 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| C1H3g04874 | 3:10,742,903-10,744,374 | + | C2H3g13174 | CX3g029317 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| C1H3g01487 | 3:10,744,989-10,750,505 | - | C2H3g07542 | CX3g030285 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| C1H3g07714 | 3:10,770,973-10,775,361 | + | C2H3g24667 | CX3g028818 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| C1H3g05140 | 3:10,804,831-10,808,817 | + | C2H3g06727 | CX3g027853 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| C1H3g26417 | 3:10,823,979-10,827,654 | - | C2H3g01256 | CX3g029596 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| C1H3g12540 | 3:10,836,268-10,841,587 | + | C2H3g20489 | CX3g030183 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| C1H3g04812 | 3:10,845,364-10,850,533 | + | C2H3g04364 | CX3g028538 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |
| C1H3g28228 | 3:10,853,063-10,857,976 | - | C2H3g14604 | CX3g025595 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| C1H3g13172 | 3:10,868,496-10,872,782 | + | C2H3g27204 | CX3g026436 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| C1H3g07101 | 3:10,873,255-10,879,738 | - | C2H3g15921 | CX3g027510 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| C1H3g17399 | 3:10,898,055-10,901,450 | + | C2H3g16525 | CX3g030370 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| C1H3g03324 | 3:10,903,707-10,904,282 | - | C2H3g29448 | CX3g028976 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| C1H3g28515 | 3:10,909,223-10,910,838 | + | C2H3g00436 | CX3g026949 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| C1H3g12262 | 3:10,912,950-10,915,810 | - | C2H3g08774 | CX3g025397 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g15931 | 3:10,920,853-10,921,678 | - | C2H3g14433 | CX3g025397 | LOC_Os03g21419 | Os03g0332100 | CYP714B2 | Detail |
| C1H3g27306 | 3:10,936,456-10,939,067 | + | C2H3g10310 | CX3g030007 | LOC_Os03g21450 | Os03g0130800 | - | Detail |
| C1H3g15898 | 3:10,939,132-10,942,188 | - | C2H3g17481 | CX3g028069 | LOC_Os03g21460 | Os03g0332400 | GLYII-2, OsGLYII2, GLYII2, OsGLYII-2 | Detail |
| C1H3g21366 | 3:10,947,735-10,949,550 | - | C2H3g22879 | CX3g029311 | LOC_Os11g11390 | Os03g0332500 | - | Detail |
| C1H3g21148 | 3:10,951,828-10,953,851 | - | C2H3g01804 | CX3g027147 | LOC_Os03g21480 | Os03g0332533 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023720 | 2:17,810,161-17,813,663 | - | C1H2g17841 | C2H2g22827 | LOC_Os02g31100 | Os02g0515600 | - | Detail |
| CX2g018953 | 2:17,858,768-17,861,176 | - | C1H2g14621 | C2H2g22713 | LOC_Os02g31140 | Os02g0516400 | CFL1 | Detail |
| CX2g022223 | 2:17,868,998-17,874,556 | - | C1H2g25008 | C2H2g27355 | LOC_Os02g31150 | Os02g0516600 | - | Detail |
| CX2g021699 | 2:17,880,481-17,884,294 | - | C1H2g07996 | C2H2g15619 | LOC_Os02g31160 | Os02g0516800 | - | Detail |
| CX2g022900 | 2:17,891,013-17,891,225 | + | - | - | - | Os12g0568166 | - | Detail |
| CX2g023379 | 2:17,897,060-17,897,341 | - | C1H2g06091 | C2H2g23348 | - | - | - | Detail |
| CX2g019146 | 2:17,903,634-17,903,810 | - | - | - | - | - | - | Detail |
| CX2g019490 | 2:17,928,214-17,933,755 | + | C1H2g24792 | C2H2g07464 | LOC_Os02g31220 | Os02g0517300 | - | Detail |
| CX2g022650 | 2:17,962,587-17,963,288 | + | - | - | - | - | - | Detail |
| CX2g023271 | 2:17,991,173-17,998,540 | + | C1H2g15770 | C2H2g15001 | LOC_Os02g31290 | Os02g0517531 | - | Detail |
| CX2g021692 | 2:18,000,019-18,000,729 | - | C1H2g19374 | C2H2g14576 | LOC_Os02g32310 | Os02g0517564 | - | Detail |
| CX2g023733 | 2:18,008,012-18,011,945 | - | C1H2g21755 | C2H2g13964 | LOC_Os02g32280 | Os02g0522700 | - | Detail |
| CX2g020911 | 2:18,032,529-18,032,690 | - | - | C2H2g28635 | - | Os02g0211100 | - | Detail |
| CX2g024433 | 2:18,033,406-18,034,037 | - | C1H2g11106 | C2H2g30310 | LOC_Os02g32200 | Os02g0521700 | - | Detail |
| CX2g023072 | 2:18,050,707-18,056,853 | + | C1H2g31338 | C2H2g12935 | LOC_Os02g32160 | Os02g0521300 | OsBON1 | Detail |
| CX2g018917 | 2:18,066,177-18,067,553 | + | C1H2g24096 | C2H2g24508 | LOC_Os02g32140 | Os02g0521100 | - | Detail |
| CX2g024178 | 2:18,070,545-18,074,320 | + | C1H2g18885 | C2H2g06534 | LOC_Os02g32120 | Os02g0520800 | - | Detail |
| CX2g024646 | 2:18,079,411-18,082,506 | + | C1H2g21080 | C2H2g08579 | LOC_Os02g32110 | Os02g0520750 | - | Detail |
| CX2g023453 | 2:18,083,470-18,083,892 | - | - | - | LOC_Os02g32080 | Os02g0520500 | - | Detail |
| CX2g023239 | 2:18,102,765-18,105,080 | + | C1H2g10881 | C2H2g05235 | LOC_Os02g32060 | Os02g0520100 | - | Detail |