| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g25251 | 4:29,770,937-29,774,339 | + | C2H4g18780 | CX4g032489 | LOC_Os04g57210 | Os04g0667700 | - | Detail |
| C1H4g10442 | 4:29,775,601-29,777,954 | - | C2H4g23930 | CX4g035437 | LOC_Os04g57220 | Os04g0667800 | - | Detail |
| C1H4g01418 | 4:29,779,140-29,782,893 | + | C2H4g04165 | CX4g031421 | LOC_Os04g57230 | Os04g0667900 | - | Detail |
| C1H4g14062 | 4:29,791,967-29,793,229 | + | C2H4g12154 | CX4g035483 | LOC_Os04g57290 | Os04g0668600 | - | Detail |
| C1H4g07320 | 4:29,800,537-29,804,207 | + | C2H4g24314 | CX4g033794 | LOC_Os04g57310 | Os04g0668800 | - | Detail |
| C1H4g11017 | 4:29,804,295-29,807,449 | - | C2H4g10649 | CX4g035618 | LOC_Os04g57320 | Os04g0668900 | IM1, OsIM1, OsIM1a, OsIM2, OsIM, PTOX1 | Detail |
| C1H4g09478 | 4:29,808,705-29,811,139 | - | C2H4g23402 | CX4g035266 | LOC_Os04g57330 | Os04g0669100 | - | Detail |
| C1H4g00749 | 4:29,811,212-29,814,428 | - | - | - | - | - | - | Detail |
| C1H4g01273 | 4:29,814,498-29,815,073 | - | C2H4g26783 | CX4g032933 | LOC_Os04g57340 | Os04g0669200 | - | Detail |
| C1H4g10679 | 4:29,818,442-29,821,945 | + | C2H4g26457 | CX4g033726 | LOC_Os04g57350 | Os04g0669300 | - | Detail |
| C1H4g10307 | 4:29,828,271-29,830,881 | - | C2H4g05368 | CX4g034719 | LOC_Os04g57370 | Os04g0669500 | - | Detail |
| C1H4g20800 | 4:29,831,258-29,832,769 | - | C2H4g28278 | CX4g032862 | LOC_Os04g57380 | Os04g0669600 | - | Detail |
| C1H4g20558 | 4:29,833,528-29,837,062 | - | C2H4g09192 | CX4g032503 | LOC_Os04g57400 | Os04g0669800 | - | Detail |
| C1H4g00350 | 4:29,839,243-29,842,416 | - | C2H4g18679 | CX4g034572 | LOC_Os04g57410 | Os04g0669900 | - | Detail |
| C1H4g00962 | 4:29,846,976-29,848,929 | + | C2H4g24032 | CX4g034090 | LOC_Os04g57420 | Os04g0670000 | - | Detail |
| C1H4g27883 | 4:29,851,581-29,853,020 | + | C2H4g19769 | CX4g034422 | LOC_Os04g57430 | Os04g0670100 | - | Detail |
| C1H4g27420 | 4:29,853,298-29,856,748 | - | C2H4g02826 | CX4g033521 | LOC_Os04g57440 | Os04g0670200 | - | Detail |
| C1H4g13887 | 4:29,861,441-29,864,962 | - | C2H4g28360 | CX4g031684 | LOC_Os04g57480 | Os04g0670400 | - | Detail |
| C1H4g28653 | 4:29,865,528-29,867,244 | + | C2H4g01861 | CX4g032812 | LOC_Os04g57490 | Os04g0670500 | OsCP1 | Detail |
| C1H4g15123 | 4:29,868,947-29,870,610 | + | C2H4g11996 | CX4g032203 | LOC_Os04g57500 | Os04g0670700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022875 | 2:12,005,246-12,005,641 | + | - | - | LOC_Os02g21890 | Os02g0324400 | FOS1, OsCLE202, CLE202 | Detail |
| CX2g020828 | 2:12,035,342-12,036,632 | + | C1H2g31750 | C2H2g09119 | - | - | - | Detail |
| CX2g023829 | 2:12,070,251-12,070,807 | + | C1H2g00592 | C2H2g11408 | LOC_Os02g21920 | Os02g0324700 | - | Detail |
| CX2g019774 | 2:12,117,207-12,121,491 | + | C1H2g04877 | C2H2g02349 | LOC_Os02g21970 | Os02g0325100 | - | Detail |
| CX2g021455 | 2:12,122,721-12,122,870 | - | - | - | - | - | - | Detail |
| CX2g023665 | 2:12,127,917-12,129,598 | + | C1H2g21594 | C2H2g28016 | LOC_Os02g22020 | Os02g0325600 | - | Detail |
| CX2g022430 | 2:12,145,031-12,148,088 | - | C1H2g15528 | C2H2g18773 | LOC_Os02g22060 | Os02g0326000 | - | Detail |
| CX2g024853 | 2:12,146,901-12,147,491 | + | C1H2g11321 | - | - | Os02g0326100 | - | Detail |
| CX2g022965 | 2:12,150,061-12,150,969 | - | C1H2g15528 | C2H2g18773 | LOC_Os02g22060 | Os02g0326000 | - | Detail |
| CX2g023700 | 2:12,151,284-12,157,309 | + | C1H2g25428 | C2H2g08252 | LOC_Os02g22070 | Os02g0326200 | - | Detail |
| CX2g022527 | 2:12,172,219-12,173,569 | + | C1H2g07382 | C2H2g01194 | - | - | - | Detail |
| CX2g023513 | 2:12,195,930-12,196,112 | + | - | - | - | - | - | Detail |
| CX2g022677 | 2:12,196,293-12,196,781 | - | - | - | - | - | - | Detail |
| CX2g022886 | 2:12,209,111-12,213,712 | + | C1H2g02728 | C2H2g26548 | LOC_Os02g22090 | Os02g0326600 | - | Detail |
| CX2g021427 | 2:12,220,727-12,227,642 | + | C1H2g20315 | C2H2g11663 | LOC_Os02g22100 | Os02g0326700 | - | Detail |
| CX2g019203 | 2:12,236,995-12,237,426 | - | - | - | - | - | - | Detail |
| CX2g020377 | 2:12,238,347-12,240,279 | + | C1H2g19811 | C2H2g11720 | LOC_Os02g22130 | Os02g0327000 | - | Detail |
| CX2g022774 | 2:12,249,512-12,252,966 | - | C1H2g29974 | C2H2g18427 | LOC_Os02g22140 | Os02g0327100 | - | Detail |
| CX2g021472 | 2:12,253,657-12,254,406 | - | - | - | - | - | - | Detail |
| CX2g021095 | 2:12,287,077-12,287,259 | + | - | - | - | Os02g0188201 | - | Detail |