| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g22097 | 3:5,940,220-5,945,212 | - | C1H3g15751 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C2H3g16447 | 3:5,956,434-5,957,435 | - | C1H3g25563 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C2H3g04493 | 3:5,957,502-5,959,837 | - | - | - | - | - | - | Detail |
| C2H3g25355 | 3:5,960,351-5,962,670 | + | C1H3g16232 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C2H3g25205 | 3:5,965,054-5,965,302 | - | - | - | - | - | - | Detail |
| C2H3g13539 | 3:5,970,034-5,973,049 | + | C1H3g23512 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C2H3g13159 | 3:5,987,474-5,991,199 | - | C1H3g12564 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C2H3g13186 | 3:6,003,033-6,004,147 | - | C1H3g01094 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C2H3g28054 | 3:6,028,737-6,031,648 | - | C1H3g22208 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C2H3g29189 | 3:6,040,962-6,046,385 | - | C1H3g02835 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C2H3g27019 | 3:6,049,025-6,052,280 | - | C1H3g05308 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C2H3g25429 | 3:6,053,183-6,054,496 | - | C1H3g12624 | - | - | - | - | Detail |
| C2H3g29391 | 3:6,059,877-6,061,780 | - | - | CX7g046886 | - | - | - | Detail |
| C2H3g25845 | 3:6,071,181-6,074,667 | + | C1H3g02612 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C2H3g14412 | 3:6,075,970-6,076,299 | - | C1H3g04395 | CX3g025129 | - | - | - | Detail |
| C2H3g19351 | 3:6,078,157-6,083,535 | + | C1H3g30651 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C2H3g08152 | 3:6,114,153-6,115,543 | + | C1H3g20871 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C2H3g24795 | 3:6,130,139-6,132,527 | + | C1H3g09365 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C2H3g23260 | 3:6,135,105-6,138,218 | - | C1H3g15109 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C2H3g25882 | 3:6,139,191-6,144,359 | - | C1H3g26830 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004741 | 1:9,850,274-9,851,971 | + | C1H1g28168 | C2H1g18802 | LOC_Os01g19440 | Os01g0254300 | - | Detail |
| CX1g001479 | 1:9,852,484-9,856,439 | - | C1H1g17298 | C2H1g05510 | LOC_Os01g19450 | Os01g0300200 | - | Detail |
| CX1g006770 | 1:9,868,125-9,868,473 | - | - | - | - | - | - | Detail |
| CX1g000059 | 1:9,871,223-9,884,189 | - | C1H1g08590 | C2H1g09549 | LOC_Os01g19470 | Os01g0300600 | - | Detail |
| CX1g005474 | 1:9,904,289-9,909,169 | + | C1H1g05959 | C2H1g24739 | LOC_Os01g19480 | Os01g0300900 | - | Detail |
| CX1g000842 | 1:9,910,812-9,914,080 | - | C1H1g20660 | C2H1g16884 | LOC_Os01g19490 | Os01g0301000 | - | Detail |
| CX1g001057 | 1:9,922,518-9,926,676 | - | C1H1g04053 | C2H1g04937 | LOC_Os01g19548 | Os01g0301700 | - | Detail |
| CX1g000700 | 1:9,932,410-9,935,745 | - | C1H1g28444 | C2H1g30243 | LOC_Os01g19610 | Os01g0301900 | - | Detail |
| CX1g005625 | 1:9,941,342-9,941,605 | + | C1H1g07961 | C2H1g25243 | - | Os01g0302000 | - | Detail |
| CX1g000668 | 1:9,950,311-9,950,478 | - | - | - | - | - | - | Detail |
| CX1g001886 | 1:9,966,558-9,967,412 | + | C1H1g08220 | C2H1g20277 | LOC_Os01g19694 | Os01g0302500 | OSH6 | Detail |
| CX1g003033 | 1:9,972,664-9,975,992 | + | C1H1g25873 | C2H1g00180 | LOC_Os01g19694 | Os01g0302500 | OSH6 | Detail |
| CX1g006561 | 1:9,992,649-9,992,852 | - | - | - | LOC_Os01g19740 | Os01g0303000 | - | Detail |
| CX1g005665 | 1:9,996,081-9,997,010 | + | - | - | - | - | - | Detail |
| CX1g002241 | 1:9,999,407-10,008,646 | + | C1H1g30343 | C2H1g22139 | LOC_Os01g19760 | Os01g0303200 | - | Detail |
| CX1g005267 | 1:10,010,046-10,011,315 | - | C1H1g08611 | C2H1g28692 | LOC_Os01g19770 | Os01g0303300 | - | Detail |
| CX1g003424 | 1:10,019,328-10,020,086 | + | C1H1g06976 | C2H1g03869 | - | - | - | Detail |
| CX1g005002 | 1:10,027,527-10,030,375 | - | C1H1g10454 | C2H1g08897 | LOC_Os01g19800 | Os01g0303600 | - | Detail |
| CX1g007072 | 1:10,041,111-10,042,106 | + | C1H1g12064 | C2H1g15081 | LOC_Os01g19820 | Os01g0303800 | - | Detail |
| CX1g004233 | 1:10,043,529-10,044,626 | - | C1H1g07873 | C2H1g09569 | LOC_Os01g19840 | Os01g0304000 | - | Detail |