| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g03888 | 4:28,295,410-28,295,805 | - | C1H4g29756 | CX4g033466 | LOC_Os04g55170 | Os04g0554500 | OsR3L1, OsHyPRP06/R3L1, OsHyPRP06 | Detail |
| C2H4g28358 | 4:28,299,164-28,310,153 | - | C1H4g08012 | CX4g036449 | LOC_Os04g55190 | Os04g0644675 | - | Detail |
| C2H4g15694 | 4:28,314,152-28,316,257 | + | C1H4g06360 | CX4g033425 | LOC_Os04g55200 | Os04g0644700 | - | Detail |
| C2H4g05660 | 4:28,317,215-28,322,007 | + | C1H4g02968 | CX4g032169 | LOC_Os04g55210 | Os04g0644800 | - | Detail |
| C2H4g12779 | 4:28,327,588-28,332,623 | + | C1H4g08695 | CX4g032248 | LOC_Os04g55220 | Os04g0644900 | - | Detail |
| C2H4g19510 | 4:28,335,294-28,348,459 | + | C1H4g06283 | CX4g033214 | LOC_Os04g55230 | Os04g0645100 | - | Detail |
| C2H4g14418 | 4:28,351,996-28,352,583 | - | C1H4g18694 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C2H4g22066 | 4:28,355,865-28,356,620 | + | - | CX4g031778 | LOC_Os04g55250 | Os04g0645500 | - | Detail |
| C2H4g01093 | 4:28,356,757-28,360,600 | - | C1H4g06884 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C2H4g27076 | 4:28,366,816-28,370,143 | - | C1H4g28592 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C2H4g00324 | 4:28,370,940-28,372,339 | - | C1H4g12666 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C2H4g28891 | 4:28,404,351-28,405,010 | - | C1H4g04933 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C2H4g25523 | 4:28,405,169-28,407,565 | - | C1H4g01013 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C2H4g00723 | 4:28,428,202-28,432,244 | - | C1H4g17955 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C2H4g03628 | 4:28,435,119-28,438,284 | + | C1H4g25822 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C2H4g20686 | 4:28,441,751-28,444,579 | + | C1H4g16013 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C2H4g26419 | 4:28,449,270-28,454,054 | - | C1H4g25119 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C2H4g12403 | 4:28,455,832-28,456,650 | + | - | CX4g034038 | LOC_Os04g55490 | Os04g0648600 | - | Detail |
| C2H4g12616 | 4:28,459,506-28,465,690 | + | C1H4g03048 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C2H4g21483 | 4:28,474,766-28,480,256 | + | C1H4g02593 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022207 | 2:9,459,294-9,463,799 | + | C1H2g04601 | C2H2g09294 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| CX2g024163 | 2:9,465,502-9,465,900 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g024821 | 2:9,468,204-9,479,235 | - | C1H2g04831 | C2H2g03135 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| CX2g020444 | 2:9,502,764-9,504,590 | + | C1H2g21563 | C2H2g23443 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| CX2g020861 | 2:9,509,433-9,513,989 | + | C1H2g29701 | C2H2g02230 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| CX2g021610 | 2:9,515,974-9,516,186 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g019433 | 2:9,524,447-9,526,139 | - | C1H2g30462 | C2H2g22254 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| CX2g021534 | 2:9,529,283-9,529,549 | - | - | - | - | - | - | Detail |
| CX2g019485 | 2:9,531,948-9,533,200 | + | C1H2g23928 | C2H2g21745 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| CX2g023880 | 2:9,536,135-9,537,862 | + | C1H2g15475 | C2H2g22076 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| CX2g020029 | 2:9,542,522-9,542,674 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g024365 | 2:9,543,714-9,548,700 | + | C1H2g20630 | C2H2g23290 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| CX2g024322 | 2:9,551,129-9,553,049 | - | C1H2g27774 | C2H2g01679 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| CX2g022454 | 2:9,556,308-9,556,562 | - | C1H12g24303 | - | LOC_Os02g24040 | - | - | Detail |
| CX2g022684 | 2:9,563,797-9,565,461 | + | C1H2g22538 | C2H2g01411 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| CX2g024670 | 2:9,582,338-9,582,526 | + | - | - | - | - | - | Detail |
| CX2g021215 | 2:9,588,231-9,596,175 | + | C1H2g23738 | C2H2g22053 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| CX2g022758 | 2:9,598,687-9,599,172 | - | - | - | LOC_Os06g10720 | - | - | Detail |
| CX2g021458 | 2:9,601,383-9,604,514 | + | C1H2g23081 | C2H2g18134 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| CX2g023725 | 2:9,609,726-9,612,642 | + | C1H2g25896 | C2H2g23947 | LOC_Os05g09570 | - | - | Detail |