| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g28058 | 4:23,204,404-23,208,486 | - | C1H4g10885 | CX4g032979 | LOC_Os04g45490 | Os04g0538100 | - | Detail |
| C2H4g13099 | 4:23,214,371-23,214,712 | - | - | - | LOC_Os04g45510 | Os04g0538300 | - | Detail |
| C2H4g04182 | 4:23,219,720-23,220,514 | - | - | CX4g032138 | LOC_Os04g45520 | Os04g0538400 | OsVTL2 | Detail |
| C2H4g08025 | 4:23,230,950-23,236,773 | - | C1H4g08093 | CX4g034021 | LOC_Os04g45570 | Os04g0538700 | - | Detail |
| C2H4g12110 | 4:23,238,109-23,243,871 | - | C1H4g10769 | CX4g032688 | LOC_Os04g45580 | Os04g0538800 | - | Detail |
| C2H4g10511 | 4:23,249,241-23,250,024 | + | C1H4g30025 | - | LOC_Os04g45590 | Os04g0538900 | - | Detail |
| C2H4g20122 | 4:23,250,430-23,251,722 | + | C1H4g16905 | - | LOC_Os04g45600 | Os04g0539000 | - | Detail |
| C2H4g25192 | 4:23,252,358-23,255,534 | - | C1H4g23975 | CX4g032029 | LOC_Os04g45610 | Os04g0539100 | - | Detail |
| C2H4g19707 | 4:23,258,258-23,260,032 | - | C1H4g17088 | CX4g035647 | LOC_Os04g45630 | Os04g0539300 | - | Detail |
| C2H4g18724 | 4:23,268,732-23,271,359 | + | C1H4g04536 | CX4g033248 | LOC_Os04g45650 | Os04g0539500 | - | Detail |
| C2H4g04312 | 4:23,280,232-23,284,690 | - | C1H4g13934 | CX4g035492 | LOC_Os04g45670 | Os04g0539800 | - | Detail |
| C2H4g29647 | 4:23,292,752-23,294,464 | + | C1H4g18759 | CX4g031384 | LOC_Os04g45690 | Os04g0540200 | OsRIP1 | Detail |
| C2H4g20715 | 4:23,298,106-23,300,282 | + | C1H4g30808 | CX4g033676 | LOC_Os04g45700 | Os04g0540300 | - | Detail |
| C2H4g10305 | 4:23,300,734-23,305,399 | - | C1H4g25127 | CX4g033064 | LOC_Os04g45720 | Os04g0540600 | - | Detail |
| C2H4g09606 | 4:23,310,170-23,311,838 | - | C1H4g14597 | CX4g036212 | LOC_Os04g45730 | Os04g0540900 | STRK1 | Detail |
| C2H4g10705 | 4:23,330,786-23,334,997 | - | C1H4g08827 | CX4g035032 | LOC_Os04g45750 | Os04g0541100 | - | Detail |
| C2H4g02427 | 4:23,351,515-23,353,691 | - | - | CX4g036159 | - | - | - | Detail |
| C2H4g12357 | 4:23,354,452-23,361,991 | + | C1H4g08954 | CX4g033606 | LOC_Os04g45800 | Os04g0541500 | OsLCBK2 | Detail |
| C2H4g17090 | 4:23,365,333-23,366,317 | + | C1H4g13532 | CX4g034688 | LOC_Os04g45810 | Os04g0541700 | HOX22, Oshox22, OsHox22 | Detail |
| C2H4g16789 | 4:23,375,514-23,378,133 | + | C1H4g31215 | CX4g031805 | LOC_Os04g45821 | Os04g0541900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022207 | 2:9,459,294-9,463,799 | + | C1H2g04601 | C2H2g09294 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| CX2g024163 | 2:9,465,502-9,465,900 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g024821 | 2:9,468,204-9,479,235 | - | C1H2g04831 | C2H2g03135 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| CX2g020444 | 2:9,502,764-9,504,590 | + | C1H2g21563 | C2H2g23443 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| CX2g020861 | 2:9,509,433-9,513,989 | + | C1H2g29701 | C2H2g02230 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| CX2g021610 | 2:9,515,974-9,516,186 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g019433 | 2:9,524,447-9,526,139 | - | C1H2g30462 | C2H2g22254 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| CX2g021534 | 2:9,529,283-9,529,549 | - | - | - | - | - | - | Detail |
| CX2g019485 | 2:9,531,948-9,533,200 | + | C1H2g23928 | C2H2g21745 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| CX2g023880 | 2:9,536,135-9,537,862 | + | C1H2g15475 | C2H2g22076 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| CX2g020029 | 2:9,542,522-9,542,674 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g024365 | 2:9,543,714-9,548,700 | + | C1H2g20630 | C2H2g23290 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| CX2g024322 | 2:9,551,129-9,553,049 | - | C1H2g27774 | C2H2g01679 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| CX2g022454 | 2:9,556,308-9,556,562 | - | C1H12g24303 | - | LOC_Os02g24040 | - | - | Detail |
| CX2g022684 | 2:9,563,797-9,565,461 | + | C1H2g22538 | C2H2g01411 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| CX2g024670 | 2:9,582,338-9,582,526 | + | - | - | - | - | - | Detail |
| CX2g021215 | 2:9,588,231-9,596,175 | + | C1H2g23738 | C2H2g22053 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| CX2g022758 | 2:9,598,687-9,599,172 | - | - | - | LOC_Os06g10720 | - | - | Detail |
| CX2g021458 | 2:9,601,383-9,604,514 | + | C1H2g23081 | C2H2g18134 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| CX2g023725 | 2:9,609,726-9,612,642 | + | C1H2g25896 | C2H2g23947 | LOC_Os05g09570 | - | - | Detail |