| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g25484 | 1:3,972,802-3,974,764 | + | C1H1g06268 | CX1g000928 | LOC_Os01g09080 | Os01g0185900 | - | Detail |
| C2H1g20040 | 1:3,975,830-3,976,192 | - | C1H1g16919 | CX1g005225 | LOC_Os01g13840 | - | - | Detail |
| C2H1g00345 | 1:3,980,244-3,980,906 | - | C1H1g17120 | CX1g005539 | LOC_Os01g09100 | Os01g0186000 | WRKY10 | Detail |
| C2H1g05521 | 1:3,990,299-3,993,269 | - | C1H1g00047 | CX1g004425 | LOC_Os01g09120 | Os01g0186200 | - | Detail |
| C2H1g16572 | 1:3,997,122-3,997,865 | - | C1H1g15730 | CX1g002492 | LOC_Os01g09130 | Os01g0186400 | - | Detail |
| C2H1g27031 | 1:3,998,375-3,998,842 | + | - | - | LOC_Os01g09140 | - | - | Detail |
| C2H1g14524 | 1:4,004,273-4,005,663 | - | C1H1g06584 | - | - | - | - | Detail |
| C2H1g20327 | 1:4,007,728-4,009,143 | - | - | - | - | - | - | Detail |
| C2H1g06089 | 1:4,036,620-4,037,426 | - | - | - | - | - | - | Detail |
| C2H1g25627 | 1:4,044,075-4,044,701 | + | - | CX1g002963 | LOC_Os01g09190 | Os01g0186600 | - | Detail |
| C2H1g24918 | 1:4,051,411-4,060,173 | - | C1H1g09605 | CX1g001893 | LOC_Os01g09200 | Os01g0186700 | OsSTK38, TINY1 | Detail |
| C2H1g06902 | 1:4,069,938-4,071,296 | + | C1H1g17733 | CX1g000937 | LOC_Os01g09220 | Os01g0186900 | - | Detail |
| C2H1g06571 | 1:4,076,753-4,077,586 | + | - | - | - | - | - | Detail |
| C2H1g05283 | 1:4,081,628-4,083,284 | + | C1H1g07377 | CX1g002460 | LOC_Os01g09230 | Os01g0187000 | - | Detail |
| C2H1g23178 | 1:4,102,082-4,113,783 | + | C1H1g28342 | CX1g002282 | LOC_Os01g09246 | Os01g0187400 | - | Detail |
| C2H1g13013 | 1:4,116,068-4,119,829 | + | C1H1g13448 | CX1g002953 | LOC_Os01g09252 | Os01g0187500 | - | Detail |
| C2H1g05231 | 1:4,123,692-4,126,189 | - | C1H1g18332 | CX1g004008 | LOC_Os01g09260 | Os01g0187600 | OsCKX1 | Detail |
| C2H1g19620 | 1:4,143,750-4,147,184 | - | C1H1g12704 | CX1g003292 | LOC_Os01g09280 | Os01g0187900 | - | Detail |
| C2H1g02695 | 1:4,154,693-4,159,021 | + | C1H1g28219 | CX1g004066 | LOC_Os01g09300 | Os01g0188100 | - | Detail |
| C2H1g02685 | 1:4,160,304-4,165,506 | - | C1H1g06279 | CX1g002675 | LOC_Os01g09305 | Os01g0188200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022207 | 2:9,459,294-9,463,799 | + | C1H2g04601 | C2H2g09294 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| CX2g024163 | 2:9,465,502-9,465,900 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g024821 | 2:9,468,204-9,479,235 | - | C1H2g04831 | C2H2g03135 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| CX2g020444 | 2:9,502,764-9,504,590 | + | C1H2g21563 | C2H2g23443 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| CX2g020861 | 2:9,509,433-9,513,989 | + | C1H2g29701 | C2H2g02230 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| CX2g021610 | 2:9,515,974-9,516,186 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g019433 | 2:9,524,447-9,526,139 | - | C1H2g30462 | C2H2g22254 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| CX2g021534 | 2:9,529,283-9,529,549 | - | - | - | - | - | - | Detail |
| CX2g019485 | 2:9,531,948-9,533,200 | + | C1H2g23928 | C2H2g21745 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| CX2g023880 | 2:9,536,135-9,537,862 | + | C1H2g15475 | C2H2g22076 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| CX2g020029 | 2:9,542,522-9,542,674 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g024365 | 2:9,543,714-9,548,700 | + | C1H2g20630 | C2H2g23290 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| CX2g024322 | 2:9,551,129-9,553,049 | - | C1H2g27774 | C2H2g01679 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| CX2g022454 | 2:9,556,308-9,556,562 | - | C1H12g24303 | - | LOC_Os02g24040 | - | - | Detail |
| CX2g022684 | 2:9,563,797-9,565,461 | + | C1H2g22538 | C2H2g01411 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| CX2g024670 | 2:9,582,338-9,582,526 | + | - | - | - | - | - | Detail |
| CX2g021215 | 2:9,588,231-9,596,175 | + | C1H2g23738 | C2H2g22053 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| CX2g022758 | 2:9,598,687-9,599,172 | - | - | - | LOC_Os06g10720 | - | - | Detail |
| CX2g021458 | 2:9,601,383-9,604,514 | + | C1H2g23081 | C2H2g18134 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| CX2g023725 | 2:9,609,726-9,612,642 | + | C1H2g25896 | C2H2g23947 | LOC_Os05g09570 | - | - | Detail |