| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30084 | 3:14,062,875-14,066,186 | + | C2H3g25165 | CX3g025932 | LOC_Os03g27320 | Os03g0390700 | OsTTL | Detail |
| C1H3g29350 | 3:14,068,181-14,072,011 | + | C2H3g02856 | CX3g027950 | LOC_Os03g27350 | Os03g0391000 | - | Detail |
| C1H3g09929 | 3:14,075,643-14,076,866 | + | C2H3g17457 | CX3g026532 | LOC_Os03g27360 | Os03g0391100 | - | Detail |
| C1H3g16806 | 3:14,082,216-14,087,526 | + | C2H3g06527 | CX3g028456 | LOC_Os03g27370 | Os03g0391400 | OsPLDα6, OsPLDalpha6 | Detail |
| C1H3g30949 | 3:14,098,577-14,102,189 | - | C2H3g10546 | CX3g028215 | LOC_Os03g27390 | Os03g0391700 | OsbHLH138 | Detail |
| C1H3g13034 | 3:14,137,069-14,139,047 | - | C2H3g23808 | CX3g030816 | LOC_Os03g27420 | Os03g0392000 | - | Detail |
| C1H3g16459 | 3:14,148,886-14,153,285 | + | C2H3g21955 | CX3g030757 | LOC_Os03g27450 | Os03g0392300 | - | Detail |
| C1H3g12299 | 3:14,166,777-14,170,489 | - | C2H3g23340 | CX3g027984 | LOC_Os03g27550 | Os03g0392600 | - | Detail |
| C1H3g05327 | 3:14,185,140-14,191,180 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27510 | Os03g0392600 | - | Detail |
| C1H3g25121 | 3:14,196,569-14,197,153 | - | C2H3g09365 | CX3g027782 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g28596 | 3:14,218,106-14,229,932 | - | C2H3g00521 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C1H3g26998 | 3:14,281,770-14,286,583 | - | C2H3g03469 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C1H3g17152 | 3:14,293,998-14,295,569 | + | C2H3g01147 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C1H3g03234 | 3:14,355,598-14,359,883 | - | C2H3g26978 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C1H3g11733 | 3:14,372,943-14,376,413 | - | C2H3g09617 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C1H3g19183 | 3:14,381,513-14,384,690 | + | C2H3g01443 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| C1H3g08236 | 3:14,388,407-14,392,805 | - | C2H3g18166 | CX3g030371 | LOC_Os03g27800 | Os03g0395300 | - | Detail |
| C1H3g01799 | 3:14,403,137-14,410,258 | + | C2H3g07826 | CX3g026141 | LOC_Os03g27820 | Os03g0395600 | - | Detail |
| C1H3g24858 | 3:14,413,176-14,413,547 | - | C2H3g28386 | - | - | - | - | Detail |
| C1H3g28884 | 3:14,430,492-14,436,797 | + | C2H3g08215 | CX3g026363 | LOC_Os03g27840 | Os03g0395900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022207 | 2:9,459,294-9,463,799 | + | C1H2g04601 | C2H2g09294 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| CX2g024163 | 2:9,465,502-9,465,900 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g024821 | 2:9,468,204-9,479,235 | - | C1H2g04831 | C2H2g03135 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| CX2g020444 | 2:9,502,764-9,504,590 | + | C1H2g21563 | C2H2g23443 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| CX2g020861 | 2:9,509,433-9,513,989 | + | C1H2g29701 | C2H2g02230 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| CX2g021610 | 2:9,515,974-9,516,186 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g019433 | 2:9,524,447-9,526,139 | - | C1H2g30462 | C2H2g22254 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| CX2g021534 | 2:9,529,283-9,529,549 | - | - | - | - | - | - | Detail |
| CX2g019485 | 2:9,531,948-9,533,200 | + | C1H2g23928 | C2H2g21745 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| CX2g023880 | 2:9,536,135-9,537,862 | + | C1H2g15475 | C2H2g22076 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| CX2g020029 | 2:9,542,522-9,542,674 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g024365 | 2:9,543,714-9,548,700 | + | C1H2g20630 | C2H2g23290 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| CX2g024322 | 2:9,551,129-9,553,049 | - | C1H2g27774 | C2H2g01679 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| CX2g022454 | 2:9,556,308-9,556,562 | - | C1H12g24303 | - | LOC_Os02g24040 | - | - | Detail |
| CX2g022684 | 2:9,563,797-9,565,461 | + | C1H2g22538 | C2H2g01411 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| CX2g024670 | 2:9,582,338-9,582,526 | + | - | - | - | - | - | Detail |
| CX2g021215 | 2:9,588,231-9,596,175 | + | C1H2g23738 | C2H2g22053 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| CX2g022758 | 2:9,598,687-9,599,172 | - | - | - | LOC_Os06g10720 | - | - | Detail |
| CX2g021458 | 2:9,601,383-9,604,514 | + | C1H2g23081 | C2H2g18134 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| CX2g023725 | 2:9,609,726-9,612,642 | + | C1H2g25896 | C2H2g23947 | LOC_Os05g09570 | - | - | Detail |