| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12280 | 1:8,429,425-8,430,071 | - | C2H1g19077 | - | - | - | - | Detail |
| C1H1g06668 | 1:8,435,439-8,439,598 | + | C2H1g22302 | CX1g001783 | LOC_Os01g16600 | Os01g0272600 | - | Detail |
| C1H1g17487 | 1:8,440,784-8,441,573 | - | C2H1g12551 | CX1g003184 | LOC_Os01g16610 | Os01g0272700 | - | Detail |
| C1H1g31877 | 1:8,442,465-8,446,267 | - | C2H1g01447 | CX1g000759 | LOC_Os01g16620 | Os01g0272800 | - | Detail |
| C1H1g25498 | 1:8,451,366-8,453,830 | - | C2H1g14051 | CX1g001142 | LOC_Os01g16640 | Os01g0273000 | - | Detail |
| C1H1g19385 | 1:8,464,927-8,475,203 | + | C2H1g03315 | CX1g005280 | LOC_Os01g11920 | Os01g0273500 | - | Detail |
| C1H1g23023 | 1:8,482,747-8,487,970 | + | C2H1g22682 | CX1g006865 | LOC_Os01g16714 | Os01g0273800 | OsYUC9 | Detail |
| C1H1g02893 | 1:8,492,987-8,494,026 | + | C2H1g16750 | CX1g002073 | - | - | - | Detail |
| C1H1g08545 | 1:8,495,054-8,501,518 | + | C2H1g10290 | CX1g004368 | - | - | - | Detail |
| C1H1g03126 | 1:8,521,138-8,522,818 | - | C2H1g15536 | CX1g006025 | LOC_Os10g33030 | Os01g0894050 | - | Detail |
| C1H1g20005 | 1:8,534,384-8,535,481 | - | C2H1g25011 | CX1g003544 | LOC_Os01g16810 | Os01g0274800 | CSA, csa | Detail |
| C1H1g28439 | 1:8,576,556-8,579,467 | - | C2H1g01383 | CX1g004330 | LOC_Os01g16850 | Os01g0275200 | - | Detail |
| C1H1g10258 | 1:8,584,256-8,585,923 | - | C2H1g01383 | CX1g004330 | LOC_Os01g16850 | Os01g0275200 | - | Detail |
| C1H1g00916 | 1:8,586,684-8,587,770 | - | C2H1g20471 | CX1g004330 | LOC_Os01g16860 | Os01g0275500 | - | Detail |
| C1H1g07114 | 1:8,591,191-8,599,036 | - | C2H1g06000 | CX1g004330 | LOC_Os01g16870 | Os01g0275600 | - | Detail |
| C1H1g06227 | 1:8,603,913-8,611,497 | - | C2H1g09858 | CX1g006091 | - | Os01g0275950 | - | Detail |
| C1H1g24427 | 1:8,618,523-8,621,424 | - | C2H1g17305 | CX1g000262 | LOC_Os01g16890 | Os01g0276000 | - | Detail |
| C1H1g03189 | 1:8,624,035-8,628,605 | + | C2H1g00431 | CX1g006712 | LOC_Os01g16900 | Os01g0276100 | - | Detail |
| C1H1g17187 | 1:8,629,871-8,635,197 | - | C2H1g21617 | CX1g003572 | LOC_Os01g16910 | Os01g0276200 | OsVDAC7 | Detail |
| C1H1g02811 | 1:8,639,688-8,640,516 | + | C2H1g10026 | CX1g005233 | LOC_Os01g16920 | Os01g0276300 | OsLEA1b | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022207 | 2:9,459,294-9,463,799 | + | C1H2g04601 | C2H2g09294 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| CX2g024163 | 2:9,465,502-9,465,900 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g024821 | 2:9,468,204-9,479,235 | - | C1H2g04831 | C2H2g03135 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| CX2g020444 | 2:9,502,764-9,504,590 | + | C1H2g21563 | C2H2g23443 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| CX2g020861 | 2:9,509,433-9,513,989 | + | C1H2g29701 | C2H2g02230 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| CX2g021610 | 2:9,515,974-9,516,186 | - | C1H2g17404 | - | LOC_Os02g17770 | - | - | Detail |
| CX2g019433 | 2:9,524,447-9,526,139 | - | C1H2g30462 | C2H2g22254 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| CX2g021534 | 2:9,529,283-9,529,549 | - | - | - | - | - | - | Detail |
| CX2g019485 | 2:9,531,948-9,533,200 | + | C1H2g23928 | C2H2g21745 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| CX2g023880 | 2:9,536,135-9,537,862 | + | C1H2g15475 | C2H2g22076 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| CX2g020029 | 2:9,542,522-9,542,674 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g024365 | 2:9,543,714-9,548,700 | + | C1H2g20630 | C2H2g23290 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| CX2g024322 | 2:9,551,129-9,553,049 | - | C1H2g27774 | C2H2g01679 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| CX2g022454 | 2:9,556,308-9,556,562 | - | C1H12g24303 | - | LOC_Os02g24040 | - | - | Detail |
| CX2g022684 | 2:9,563,797-9,565,461 | + | C1H2g22538 | C2H2g01411 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| CX2g024670 | 2:9,582,338-9,582,526 | + | - | - | - | - | - | Detail |
| CX2g021215 | 2:9,588,231-9,596,175 | + | C1H2g23738 | C2H2g22053 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| CX2g022758 | 2:9,598,687-9,599,172 | - | - | - | LOC_Os06g10720 | - | - | Detail |
| CX2g021458 | 2:9,601,383-9,604,514 | + | C1H2g23081 | C2H2g18134 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| CX2g023725 | 2:9,609,726-9,612,642 | + | C1H2g25896 | C2H2g23947 | LOC_Os05g09570 | - | - | Detail |