| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g22426 | 4:29,280,449-29,284,611 | - | C2H4g07943 | CX4g035564 | LOC_Os04g56320 | Os04g0658300 | - | Detail |
| C1H4g02567 | 4:29,285,564-29,287,483 | + | C2H4g15217 | CX4g034664 | LOC_Os04g56330 | Os04g0658400 | - | Detail |
| C1H4g28073 | 4:29,289,212-29,290,711 | + | - | - | - | - | - | Detail |
| C1H4g14487 | 4:29,292,438-29,294,195 | + | C2H4g01057 | CX4g032825 | LOC_Os04g56360 | Os04g0658700 | - | Detail |
| C1H4g05647 | 4:29,309,896-29,310,481 | + | C2H4g03523 | CX4g035898 | LOC_Os04g56390 | Os04g0659000 | - | Detail |
| C1H4g10806 | 4:29,311,057-29,314,991 | - | C2H4g04887 | CX4g036192 | LOC_Os04g56400 | Os04g0659100 | - | Detail |
| C1H4g14313 | 4:29,315,932-29,318,966 | - | C2H4g04584 | CX4g033838 | LOC_Os04g56405 | Os04g0659150 | - | Detail |
| C1H4g16762 | 4:29,318,801-29,321,597 | + | - | - | - | - | - | Detail |
| C1H4g07874 | 4:29,332,150-29,336,420 | + | C2H4g27064 | CX4g035777 | LOC_Os04g56440 | Os04g0659400 | - | Detail |
| C1H4g27386 | 4:29,336,788-29,340,898 | - | C2H4g24328 | CX4g036481 | LOC_Os04g56450 | Os04g0659500 | - | Detail |
| C1H4g14580 | 4:29,343,264-29,344,325 | + | C2H4g10685 | - | LOC_Os04g56460 | Os04g0625600 | - | Detail |
| C1H4g18216 | 4:29,347,249-29,349,605 | + | C2H4g12106 | CX4g034160 | LOC_Os04g56470 | Os04g0659800 | OsAAP14 | Detail |
| C1H4g27663 | 4:29,350,119-29,357,662 | + | C2H4g12958 | CX4g035966 | LOC_Os04g56480 | Os04g0659900 | LML1, OsPELOTA, splHM47, spl<sup>HM47</sup> | Detail |
| C1H4g08060 | 4:29,387,304-29,393,142 | - | C2H4g24952 | CX4g036525 | LOC_Os04g56510 | Os04g0660200 | - | Detail |
| C1H4g00868 | 4:29,394,939-29,397,084 | + | C2H4g30016 | CX4g036101 | LOC_Os04g56520 | Os04g0660400 | - | Detail |
| C1H4g10729 | 4:29,397,514-29,409,092 | - | C2H4g26135 | CX4g035137 | LOC_Os04g56530 | Os04g0660500 | OsMAPKKKε | Detail |
| C1H4g10414 | 4:29,410,932-29,413,204 | - | C2H4g29217 | - | LOC_Os04g56540 | Os04g0660600 | - | Detail |
| C1H4g30756 | 4:29,418,480-29,421,170 | + | C2H4g17344 | CX4g033242 | LOC_Os04g56560 | Os04g0660900 | - | Detail |
| C1H4g23437 | 4:29,422,380-29,423,153 | - | C2H4g20585 | CX4g035810 | LOC_Os04g56570 | Os04g0661100 | - | Detail |
| C1H4g26877 | 4:29,423,924-29,435,866 | - | C2H4g16922 | CX4g032179 | LOC_Os04g56590 | Os04g0661200 | OsIPK1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005315 | 1:9,689,838-9,691,704 | - | C1H1g10373 | C2H1g23237 | LOC_Os01g19140 | Os01g0295900 | - | Detail |
| CX1g006428 | 1:9,691,739-9,694,797 | - | C1H1g10373 | C2H1g15168 | LOC_Os01g19160 | Os01g0296000 | - | Detail |
| CX1g002769 | 1:9,696,286-9,698,633 | + | C1H1g21926 | C2H1g21823 | LOC_Os01g19150 | Os01g0296100 | - | Detail |
| CX1g004527 | 1:9,704,213-9,705,926 | + | C1H1g30685 | C2H1g25050 | LOC_Os01g19170 | Os01g0296200 | PSL1 | Detail |
| CX1g001795 | 1:9,726,302-9,726,538 | - | - | - | - | - | - | Detail |
| CX1g006429 | 1:9,733,604-9,736,143 | + | C1H1g03525 | C2H1g08175 | LOC_Os01g19220 | Os01g0296700 | - | Detail |
| CX1g007175 | 1:9,739,118-9,745,386 | + | C1H1g03357 | C2H1g19176 | LOC_Os01g19240 | Os01g0296900 | - | Detail |
| CX1g006227 | 1:9,750,210-9,751,871 | + | C1H1g23194 | C2H1g09057 | LOC_Os01g19260 | Os01g0297200 | OsAAA-ATPase2 | Detail |
| CX1g004318 | 1:9,766,177-9,767,448 | - | C1H5g12314 | C2H5g23455 | LOC_Os01g19280 | Os05g0539150 | - | Detail |
| CX1g004800 | 1:9,779,760-9,782,671 | + | C1H1g05646 | C2H1g08850 | LOC_Os01g19290 | Os01g0297700 | - | Detail |
| CX1g002293 | 1:9,791,693-9,791,908 | + | - | - | - | - | - | Detail |
| CX1g000987 | 1:9,792,173-9,792,632 | - | - | C2H2g15841 | - | Os01g0238375 | - | Detail |
| CX1g005490 | 1:9,799,580-9,800,473 | + | C1H1g30123 | C2H1g02664 | LOC_Os01g19330 | Os01g0298400 | Os2R_MYB6 | Detail |
| CX1g002108 | 1:9,812,629-9,813,059 | - | C1H1g23350 | C2H1g08916 | LOC_Os01g19370 | Os01g0299100 | - | Detail |
| CX1g004343 | 1:9,815,539-9,817,469 | + | C1H1g13589 | C2H1g18159 | LOC_Os01g19380 | Os01g0299200 | - | Detail |
| CX1g004126 | 1:9,819,886-9,823,940 | - | C1H1g12729 | C2H1g30139 | LOC_Os01g19390 | Os01g0299300 | - | Detail |
| CX1g006104 | 1:9,827,181-9,827,679 | + | C1H1g22162 | C2H1g27478 | LOC_Os01g19400 | Os01g0299400 | - | Detail |
| CX1g000065 | 1:9,831,124-9,832,704 | - | - | - | LOC_Os01g19410 | Os01g0299500 | - | Detail |
| CX1g003386 | 1:9,836,393-9,837,016 | - | C1H1g29864 | - | LOC_Os01g19430 | Os01g0299700 | - | Detail |
| CX1g001495 | 1:9,840,699-9,841,304 | - | C1H1g29864 | - | LOC_Os01g19430 | Os01g0300000 | - | Detail |