| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g19852 | 1:27,939,465-27,941,499 | - | C2H1g24369 | CX1g001202 | - | Os01g0748100 | - | Detail |
| C1H1g12110 | 1:27,942,290-27,943,113 | - | C2H1g28384 | CX1g001852 | LOC_Os01g54430 | Os01g0748150 | - | Detail |
| C1H1g06433 | 1:27,948,211-27,948,642 | - | C2H1g16377 | CX1g005907 | LOC_Os01g54450 | Os01g0748300 | - | Detail |
| C1H1g03873 | 1:27,948,741-27,950,840 | + | C2H1g07802 | - | - | - | - | Detail |
| C1H1g15001 | 1:27,952,506-27,953,451 | - | C2H1g01977 | - | LOC_Os01g54460 | - | - | Detail |
| C1H1g03729 | 1:27,957,384-27,958,925 | + | C2H1g03618 | CX1g003919 | LOC_Os01g54470 | Os01g0748500 | - | Detail |
| C1H1g31289 | 1:27,959,205-27,962,965 | - | C2H1g11065 | CX1g002998 | LOC_Os01g54480 | Os01g0748600 | - | Detail |
| C1H1g13303 | 1:27,969,333-27,971,498 | + | C2H1g14520 | CX1g004481 | LOC_Os01g54490 | Os01g0748800 | - | Detail |
| C1H1g07195 | 1:27,976,833-27,977,195 | + | C2H1g25503 | CX1g002648 | - | - | - | Detail |
| C1H1g04026 | 1:27,977,529-27,981,091 | + | C2H1g05314 | CX1g006043 | LOC_Os01g54510 | Os01g0748900 | - | Detail |
| C1H1g06199 | 1:27,984,884-27,986,890 | + | C2H1g08416 | CX1g005528 | LOC_Os01g54515 | Os01g0748950 | OsNPF4.5 | Detail |
| C1H1g21519 | 1:27,987,165-27,988,265 | + | C2H1g22814 | CX1g000885 | LOC_Os01g54520 | Os01g0749000 | - | Detail |
| C1H1g06931 | 1:27,989,241-27,991,698 | + | C2H1g20660 | CX1g004193 | LOC_Os01g54530 | Os01g0749100 | - | Detail |
| C1H1g02075 | 1:27,992,483-27,994,856 | + | C2H1g21635 | CX1g000277 | LOC_Os01g54540 | Os01g0749200 | WLP1, cp rpl13, cp RPL13 | Detail |
| C1H1g00896 | 1:27,995,734-27,997,984 | + | C2H1g02265 | CX1g005465 | LOC_Os01g54550 | Os01g0749300 | HSFA4A, OsHsfA4a, OsHsfA4b, OsHsf-04, HSFA4B, HSF04, OsHSF9, RHSF9, HSF9 | Detail |
| C1H1g09179 | 1:27,998,928-28,003,010 | - | C2H1g14114 | CX1g003457 | LOC_Os01g54560 | Os01g0749400 | - | Detail |
| C1H1g19262 | 1:28,019,377-28,024,544 | + | C2H1g10922 | CX1g003630 | LOC_Os01g54580 | Os01g0749900 | - | Detail |
| C1H1g17809 | 1:28,028,092-28,031,780 | + | C2H1g29233 | CX1g000465 | LOC_Os01g54590 | Os01g0750000 | - | Detail |
| C1H1g24495 | 1:28,034,434-28,036,116 | - | C2H1g09211 | CX1g004996 | LOC_Os01g54600 | Os01g0750100 | WRKY13, OsWRKY13 | Detail |
| C1H1g00277 | 1:28,045,281-28,050,980 | + | C2H1g25863 | CX1g006527 | LOC_Os01g54620 | Os01g0750300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005315 | 1:9,689,838-9,691,704 | - | C1H1g10373 | C2H1g23237 | LOC_Os01g19140 | Os01g0295900 | - | Detail |
| CX1g006428 | 1:9,691,739-9,694,797 | - | C1H1g10373 | C2H1g15168 | LOC_Os01g19160 | Os01g0296000 | - | Detail |
| CX1g002769 | 1:9,696,286-9,698,633 | + | C1H1g21926 | C2H1g21823 | LOC_Os01g19150 | Os01g0296100 | - | Detail |
| CX1g004527 | 1:9,704,213-9,705,926 | + | C1H1g30685 | C2H1g25050 | LOC_Os01g19170 | Os01g0296200 | PSL1 | Detail |
| CX1g001795 | 1:9,726,302-9,726,538 | - | - | - | - | - | - | Detail |
| CX1g006429 | 1:9,733,604-9,736,143 | + | C1H1g03525 | C2H1g08175 | LOC_Os01g19220 | Os01g0296700 | - | Detail |
| CX1g007175 | 1:9,739,118-9,745,386 | + | C1H1g03357 | C2H1g19176 | LOC_Os01g19240 | Os01g0296900 | - | Detail |
| CX1g006227 | 1:9,750,210-9,751,871 | + | C1H1g23194 | C2H1g09057 | LOC_Os01g19260 | Os01g0297200 | OsAAA-ATPase2 | Detail |
| CX1g004318 | 1:9,766,177-9,767,448 | - | C1H5g12314 | C2H5g23455 | LOC_Os01g19280 | Os05g0539150 | - | Detail |
| CX1g004800 | 1:9,779,760-9,782,671 | + | C1H1g05646 | C2H1g08850 | LOC_Os01g19290 | Os01g0297700 | - | Detail |
| CX1g002293 | 1:9,791,693-9,791,908 | + | - | - | - | - | - | Detail |
| CX1g000987 | 1:9,792,173-9,792,632 | - | - | C2H2g15841 | - | Os01g0238375 | - | Detail |
| CX1g005490 | 1:9,799,580-9,800,473 | + | C1H1g30123 | C2H1g02664 | LOC_Os01g19330 | Os01g0298400 | Os2R_MYB6 | Detail |
| CX1g002108 | 1:9,812,629-9,813,059 | - | C1H1g23350 | C2H1g08916 | LOC_Os01g19370 | Os01g0299100 | - | Detail |
| CX1g004343 | 1:9,815,539-9,817,469 | + | C1H1g13589 | C2H1g18159 | LOC_Os01g19380 | Os01g0299200 | - | Detail |
| CX1g004126 | 1:9,819,886-9,823,940 | - | C1H1g12729 | C2H1g30139 | LOC_Os01g19390 | Os01g0299300 | - | Detail |
| CX1g006104 | 1:9,827,181-9,827,679 | + | C1H1g22162 | C2H1g27478 | LOC_Os01g19400 | Os01g0299400 | - | Detail |
| CX1g000065 | 1:9,831,124-9,832,704 | - | - | - | LOC_Os01g19410 | Os01g0299500 | - | Detail |
| CX1g003386 | 1:9,836,393-9,837,016 | - | C1H1g29864 | - | LOC_Os01g19430 | Os01g0299700 | - | Detail |
| CX1g001495 | 1:9,840,699-9,841,304 | - | C1H1g29864 | - | LOC_Os01g19430 | Os01g0300000 | - | Detail |