| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g26693 | 1:7,013,694-7,015,288 | + | C1H1g15330 | CX1g006141 | LOC_Os01g13760 | Os01g0239100 | - | Detail |
| C2H1g11698 | 1:7,016,485-7,018,548 | + | C1H1g15330 | CX1g006141 | LOC_Os01g13760 | Os01g0239100 | - | Detail |
| C2H1g30390 | 1:7,018,981-7,023,319 | - | C1H1g10674 | CX1g003377 | LOC_Os01g13770 | Os01g0239200 | TPT | Detail |
| C2H1g03702 | 1:7,025,404-7,026,127 | + | - | CX1g003312 | LOC_Os01g13780 | Os01g0239300 | - | Detail |
| C2H1g05246 | 1:7,040,354-7,044,415 | + | C1H1g29806 | CX1g003032 | LOC_Os01g13800 | Os01g0239700 | - | Detail |
| C2H1g17922 | 1:7,067,231-7,068,034 | + | C1H1g14821 | CX1g003858 | LOC_Os01g13870 | Os01g0240700 | - | Detail |
| C2H1g04288 | 1:7,068,100-7,068,674 | + | C1H1g26893 | CX1g003858 | LOC_Os01g13870 | Os01g0240700 | - | Detail |
| C2H1g22442 | 1:7,077,274-7,078,266 | + | C1H1g22711 | CX1g002448 | LOC_Os01g13880 | Os01g0302900 | - | Detail |
| C2H1g01439 | 1:7,087,539-7,089,139 | + | C1H1g13790 | CX1g003506 | LOC_Os01g13930 | Os01g0241000 | - | Detail |
| C2H1g00102 | 1:7,090,595-7,094,527 | - | C1H1g16293 | CX1g001602 | LOC_Os01g13940 | Os01g0241100 | - | Detail |
| C2H1g18536 | 1:7,099,078-7,099,299 | - | - | CX1g002010 | - | - | - | Detail |
| C2H1g22273 | 1:7,100,873-7,101,295 | + | C1H1g15115 | CX1g002619 | LOC_Os01g13950 | Os01g0241400 | PHS9 | Detail |
| C2H1g07537 | 1:7,115,790-7,117,615 | + | C1H1g01093 | CX1g000413 | LOC_Os01g14010 | Os01g0242200 | - | Detail |
| C2H1g23925 | 1:7,120,815-7,123,441 | + | C1H1g03627 | CX1g001627 | LOC_Os01g14020 | Os01g0242300 | - | Detail |
| C2H1g16233 | 1:7,124,515-7,125,264 | + | C1H1g30844 | CX1g006563 | LOC_Os01g14030 | Os01g0242400 | - | Detail |
| C2H1g27390 | 1:7,126,132-7,129,214 | - | C1H1g31589 | CX1g002990 | LOC_Os01g14040 | Os01g0242500 | - | Detail |
| C2H1g18566 | 1:7,131,820-7,137,629 | - | C1H1g24637 | CX1g001173 | LOC_Os01g14050 | Os01g0242600 | - | Detail |
| C2H1g05181 | 1:7,141,104-7,143,385 | + | C1H1g21695 | CX1g006070 | LOC_Os01g14070 | Os01g0242900 | - | Detail |
| C2H1g29594 | 1:7,145,112-7,147,323 | - | C1H1g07595 | CX1g002725 | LOC_Os01g14080 | Os01g0243000 | - | Detail |
| C2H1g03298 | 1:7,150,077-7,158,416 | + | C1H1g05434 | CX1g006119 | LOC_Os01g14090 | Os01g0243100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |