| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g07410 | 12:3,472,251-3,472,979 | + | C1H12g19045 | CX12g017802 | - | Os12g0174300 | - | Detail |
| C2H12g28346 | 12:3,483,037-3,484,175 | + | C1H12g09187 | CX12g017402 | LOC_Os12g07580 | Os12g0174700 | - | Detail |
| C2H12g00464 | 12:3,486,094-3,490,982 | - | C1H12g24191 | CX12g015542 | LOC_Os12g07590 | Os12g0174800 | - | Detail |
| C2H12g23569 | 12:3,521,437-3,522,407 | + | C1H12g21338 | CX12g017649 | LOC_Os12g07640 | Os12g0175400 | Os2R_MYB94 | Detail |
| C2H12g11252 | 12:3,530,125-3,533,793 | - | C1H12g22991 | CX12g017726 | LOC_Os12g07650 | Os12g0175500 | - | Detail |
| C2H12g28545 | 12:3,534,535-3,534,861 | + | C1H12g00864 | CX12g015326 | LOC_Os08g06840 | - | - | Detail |
| C2H12g13795 | 12:3,536,349-3,536,665 | + | C1H12g14489 | - | - | Os12g0175600 | - | Detail |
| C2H12g30577 | 12:3,537,932-3,543,250 | + | C1H12g30297 | CX12g016511 | LOC_Os12g07670 | Os12g0175700 | - | Detail |
| C2H12g06935 | 12:3,543,825-3,545,078 | - | C1H12g05808 | CX12g017234 | LOC_Os12g07680 | Os12g0175900 | OsRpp30-S | Detail |
| C2H12g18511 | 12:3,553,194-3,554,953 | + | C1H12g28160 | CX12g015996 | LOC_Os12g07700 | Os12g0176200 | - | Detail |
| C2H12g27983 | 12:3,559,141-3,562,746 | + | C1H12g16798 | CX12g015938 | LOC_Os12g07720 | Os12g0176500 | OsRFC2 | Detail |
| C2H12g27488 | 12:3,565,048-3,570,862 | + | C1H12g30682 | CX12g018125 | LOC_Os12g07730 | Os12g0176700 | - | Detail |
| C2H12g17327 | 12:3,570,986-3,575,755 | - | C1H12g08037 | CX12g015133 | LOC_Os12g07740 | Os12g0607100 | - | Detail |
| C2H12g23643 | 12:3,596,229-3,596,537 | + | C1H12g31390 | - | - | - | - | Detail |
| C2H12g14704 | 12:3,601,368-3,604,859 | + | C1H12g25677 | CX12g016901 | LOC_Os12g07780 | Os12g0177500 | - | Detail |
| C2H12g12005 | 12:3,608,264-3,613,620 | + | C1H12g07287 | CX12g016506 | LOC_Os12g07800 | Os12g0177800 | SDRLP-12 | Detail |
| C2H12g12449 | 12:3,616,987-3,625,500 | + | C1H12g20497 | CX12g018084 | LOC_Os12g07810 | Os12g0178000 | - | Detail |
| C2H12g21381 | 12:3,625,771-3,629,447 | - | C1H12g08440 | CX12g015160 | LOC_Os12g07820 | Os12g0178100 | - | Detail |
| C2H12g00470 | 12:3,631,375-3,634,498 | - | C1H12g29500 | CX12g018086 | LOC_Os12g07830 | Os12g0178200 | - | Detail |
| C2H12g13968 | 12:3,638,388-3,640,613 | + | C1H12g13744 | CX12g016891 | LOC_Os12g07840 | Os12g0178250 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |