| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13527 | 1:35,592,228-35,593,819 | - | C1H1g17623 | CX1g000619 | LOC_Os01g69240 | Os01g0921500 | - | Detail |
| C2H1g04376 | 1:35,594,292-35,597,650 | + | C1H1g22149 | CX1g000315 | LOC_Os01g69250 | Os01g0921600 | - | Detail |
| C2H1g29960 | 1:35,610,814-35,612,304 | - | C1H1g03696 | CX1g005205 | LOC_Os01g69270 | Os01g0921800 | WCR1 | Detail |
| C2H1g09433 | 1:35,666,759-35,671,474 | + | C1H1g03830 | CX1g004693 | LOC_Os01g69830 | Os01g0922600 | OsSPL2 | Detail |
| C2H1g26166 | 1:35,687,859-35,688,056 | + | C1H1g12266 | CX1g007029 | LOC_Os01g69850 | Os01g0922800 | MADS51, OsMADS51, OsMADS65, MADS65 | Detail |
| C2H1g12395 | 1:35,705,899-35,708,743 | + | C1H1g07999 | - | LOC_Os01g69850 | Os01g0922800 | MADS51, OsMADS51, OsMADS65, MADS65 | Detail |
| C2H1g01640 | 1:35,721,360-35,725,310 | + | C1H1g11016 | CX1g004462 | LOC_Os01g69900 | Os01g0923300 | - | Detail |
| C2H1g04390 | 1:35,728,528-35,734,512 | + | C1H1g13300 | CX1g004735 | LOC_Os01g69910 | Os01g0923600 | - | Detail |
| C2H1g25723 | 1:35,735,075-35,740,903 | - | C1H1g01597 | CX1g001516 | LOC_Os01g69920 | Os01g0923700 | HK3, OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b | Detail |
| C2H1g05728 | 1:35,776,915-35,779,849 | - | C1H1g02952 | CX1g005730 | LOC_Os01g69940 | Os01g0923900 | - | Detail |
| C2H1g01923 | 1:35,787,046-35,788,517 | + | C1H1g29264 | CX1g005835 | LOC_Os01g69950 | Os01g0924000 | - | Detail |
| C2H1g07961 | 1:35,796,289-35,800,606 | - | C1H1g10772 | CX1g006541 | LOC_Os01g69970 | Os01g0924300 | - | Detail |
| C2H1g18855 | 1:35,816,815-35,823,491 | - | C1H1g29827 | CX1g005525 | LOC_Os01g69990 | Os01g0924600 | MHZ9 | Detail |
| C2H1g25318 | 1:35,829,628-35,831,721 | - | C1H1g07165 | CX1g000477 | LOC_Os01g70010 | Os01g0924800 | - | Detail |
| C2H1g12545 | 1:35,834,800-35,840,852 | + | C1H1g27548 | CX1g006526 | LOC_Os01g70020 | Os01g0924900 | - | Detail |
| C2H1g09893 | 1:35,842,124-35,844,153 | + | C1H1g13467 | CX1g005950 | LOC_Os01g63480 | Os01g0924933 | DPW2 | Detail |
| C2H1g29042 | 1:35,861,209-35,867,478 | - | C1H1g14986 | CX1g000475 | LOC_Os01g70060 | Os01g0925000 | - | Detail |
| C2H1g12590 | 1:35,873,631-35,874,811 | - | C1H1g14986 | CX1g000475 | LOC_Os01g70060 | Os01g0925000 | - | Detail |
| C2H1g27652 | 1:35,877,572-35,882,385 | - | C1H1g20180 | CX1g005348 | LOC_Os01g70080 | Os01g0925100 | - | Detail |
| C2H1g21256 | 1:35,884,785-35,887,277 | + | C1H1g19559 | CX1g006900 | LOC_Os01g70090 | Os01g0925200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |