| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g09624 | 1:30,787,077-30,788,245 | - | C1H1g00772 | CX1g005248 | LOC_Os01g60020 | Os01g0816100 | OsNAC4 | Detail |
| C2H1g09286 | 1:30,799,473-30,816,246 | - | C1H1g15712 | CX1g002744 | LOC_Os01g60040 | Os01g0816400 | - | Detail |
| C2H1g26961 | 1:30,828,310-30,834,847 | - | C1H1g15897 | CX1g002744 | LOC_Os01g60050 | Os01g0816500 | - | Detail |
| C2H1g04146 | 1:30,837,506-30,842,632 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60060 | Os01g0816600 | - | Detail |
| C2H1g13967 | 1:30,844,373-30,844,582 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60070 | Os01g0816600 | - | Detail |
| C2H1g24791 | 1:30,845,806-30,847,272 | + | C1H1g24642 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g25178 | 1:30,847,362-30,847,664 | + | C1H1g24879 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g12383 | 1:30,852,593-30,855,794 | - | C1H1g23182 | CX1g001408 | LOC_Os01g60110 | Os01g0817000 | - | Detail |
| C2H1g27536 | 1:30,858,990-30,862,426 | - | C1H1g20937 | CX1g001908 | LOC_Os01g60120 | Os01g0817100 | - | Detail |
| C2H1g05301 | 1:30,867,420-30,870,525 | + | C1H1g16273 | CX1g005873 | LOC_Os01g60140 | Os01g0817400 | - | Detail |
| C2H1g04044 | 1:30,871,690-30,872,622 | - | C1H1g15906 | CX1g004355 | - | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| C2H1g17170 | 1:30,884,562-30,888,327 | + | C1H1g14583 | CX1g000357 | LOC_Os01g60190 | Os01g0817700 | - | Detail |
| C2H1g22450 | 1:30,888,779-30,892,097 | - | C1H1g28961 | CX1g003723 | LOC_Os01g60200 | Os01g0817800 | - | Detail |
| C2H1g03576 | 1:30,903,588-30,907,758 | + | C1H1g28985 | CX1g005948 | LOC_Os01g60230 | Os01g0818000 | - | Detail |
| C2H1g16399 | 1:30,911,405-30,912,871 | + | C1H1g10378 | CX1g005236 | - | Os01g0818100 | - | Detail |
| C2H1g17192 | 1:30,922,297-30,925,172 | + | C1H1g09654 | CX1g002636 | LOC_Os01g60260 | Os01g0818300 | - | Detail |
| C2H1g08644 | 1:30,931,215-30,934,712 | + | C1H1g30151 | CX1g003042 | LOC_Os01g60270 | Os01g0818400 | - | Detail |
| C2H1g07956 | 1:30,936,955-30,947,811 | - | C1H1g03453 | CX1g000179 | LOC_Os01g60280 | Os01g0818700 | - | Detail |
| C2H1g13182 | 1:30,953,125-30,956,828 | - | - | - | LOC_Os01g60290 | Os01g0818900 | - | Detail |
| C2H1g24195 | 1:30,956,541-30,960,942 | + | C1H1g23393 | CX1g001508 | LOC_Os01g60309 | Os01g0819000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |