| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g10905 | 12:3,940,550-3,941,078 | + | - | - | - | Os12g0188566 | - | Detail |
| C1H12g30014 | 12:3,942,146-3,942,975 | + | C2H12g12412 | - | - | - | - | Detail |
| C1H12g05241 | 12:3,942,977-3,948,556 | + | C2H12g21980 | CX12g017298 | LOC_Os12g08740 | Os12g0188900 | - | Detail |
| C1H12g21808 | 12:3,946,973-3,947,506 | - | C2H12g01844 | CX12g017024 | - | Os12g0189100 | - | Detail |
| C1H12g16915 | 12:3,980,398-3,984,683 | + | C2H12g01367 | CX12g015280 | LOC_Os12g08760 | Os12g0189300 | - | Detail |
| C1H12g28974 | 12:3,986,862-3,987,762 | + | C2H12g03276 | CX12g018701 | LOC_Os12g08770 | Os12g0189400 | - | Detail |
| C1H12g04629 | 12:3,997,749-3,999,528 | - | C2H12g01795 | CX12g017300 | LOC_Os12g08780 | Os12g0189500 | OsYUC11, YUCCA11 | Detail |
| C1H12g25775 | 12:4,021,234-4,025,059 | + | C2H12g08940 | CX12g018088 | LOC_Os12g08800 | Os12g0189900 | - | Detail |
| C1H12g13538 | 12:4,025,561-4,029,769 | - | C2H12g15639 | CX12g017476 | LOC_Os12g08810 | Os12g0190000 | - | Detail |
| C1H12g06109 | 12:4,042,562-4,047,869 | + | C2H12g19857 | CX12g015669 | LOC_Os12g08820 | Os12g0190100 | - | Detail |
| C1H12g18735 | 12:4,047,979-4,049,541 | - | C2H12g19884 | CX12g016118 | LOC_Os12g08830 | Os12g0190200 | - | Detail |
| C1H12g28925 | 12:4,068,012-4,071,065 | - | C2H12g19779 | CX12g016245 | LOC_Os12g08850 | Os12g0190400 | - | Detail |
| C1H12g03417 | 12:4,105,045-4,107,644 | + | C2H12g16869 | CX12g016877 | LOC_Os12g08900 | Os12g0191300 | - | Detail |
| C1H12g08391 | 12:4,114,054-4,115,322 | - | C2H12g24855 | CX12g018491 | LOC_Os12g08920 | Os12g0191500 | - | Detail |
| C1H12g22853 | 12:4,158,792-4,163,129 | + | C2H12g23890 | CX12g017759 | LOC_Os12g09000 | Os12g0192500 | - | Detail |
| C1H12g04899 | 12:4,196,929-4,197,375 | + | C2H12g18630 | CX12g017759 | LOC_Os12g09000 | - | - | Detail |
| C1H12g19513 | 12:4,247,018-4,250,051 | - | C2H12g03943 | - | LOC_Os12g09060 | - | - | Detail |
| C1H12g16068 | 12:4,268,075-4,273,405 | + | C2H12g02493 | CX12g016460 | LOC_Os12g09320 | Os12g0181600 | OsAAP15 | Detail |
| C1H12g03375 | 12:4,278,914-4,282,601 | - | C2H12g13234 | CX12g015659 | LOC_Os12g09300 | Os12g0194900 | OsAAP4, OsAAP4a | Detail |
| C1H12g16559 | 12:4,290,781-4,299,040 | - | C2H12g01465 | CX12g017686 | LOC_Os12g09290 | Os12g0194800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |