| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g25557 | 11:15,749,241-15,749,648 | - | C2H11g22910 | CX11g014792 | LOC_Os11g30370 | Os11g0496600 | - | Detail |
| C1H11g09915 | 11:15,773,627-15,774,320 | + | C2H11g12093 | CX11g012613 | - | - | - | Detail |
| C1H11g16319 | 11:15,780,583-15,787,055 | + | C2H11g14273 | CX11g014085 | LOC_Os11g30410 | Os11g0497000 | OsSAE1a | Detail |
| C1H11g25643 | 11:15,812,926-15,815,269 | + | C2H11g22898 | CX11g012527 | LOC_Os11g30484 | Os11g0498400 | - | Detail |
| C1H11g27815 | 11:15,820,827-15,821,713 | + | C2H11g13934 | CX11g012799 | LOC_Os11g30500 | Os11g0498600 | - | Detail |
| C1H11g08228 | 11:15,855,816-15,864,029 | + | C2H11g29258 | CX11g013443 | LOC_Os11g30560 | Os11g0499600 | - | Detail |
| C1H11g25372 | 11:15,892,494-15,893,002 | + | C2H11g26398 | CX11g012607 | LOC_Os11g30760 | Os11g0502700 | - | Detail |
| C1H11g05886 | 11:15,913,226-15,920,331 | + | C2H11g26777 | CX11g013520 | LOC_Os11g30790 | Os11g0503400 | - | Detail |
| C1H11g21889 | 11:15,923,190-15,923,681 | + | C2H11g16582 | CX11g010910 | LOC_Os11g30810 | Os11g0503900 | - | Detail |
| C1H11g08735 | 11:15,924,188-15,924,835 | + | C2H11g16582 | CX11g010910 | LOC_Os11g30810 | Os11g0503900 | - | Detail |
| C1H11g27107 | 11:15,927,933-15,928,478 | + | C2H11g13181 | CX11g010910 | LOC_Os11g30830 | Os11g0504900 | - | Detail |
| C1H11g18860 | 11:15,931,659-15,937,116 | + | C2H11g04701 | CX11g012967 | - | - | - | Detail |
| C1H11g30898 | 11:15,942,075-15,945,173 | + | C2H11g04191 | - | - | - | - | Detail |
| C1H11g04694 | 11:15,954,724-15,954,989 | + | C2H11g00265 | - | - | - | - | Detail |
| C1H11g22326 | 11:15,956,029-15,957,118 | + | C2H11g03682 | CX11g013108 | LOC_Os11g30910 | Os11g0505300 | STV11, OsSOT1 | Detail |
| C1H11g18981 | 11:15,992,245-15,993,382 | - | C2H11g12950 | CX11g012904 | - | - | - | Detail |
| C1H11g04733 | 11:15,995,549-15,996,340 | - | C2H11g07707 | CX11g013034 | LOC_Os11g31070 | Os11g0506300 | - | Detail |
| C1H11g01433 | 11:16,020,079-16,022,560 | - | C2H11g24452 | CX11g011882 | - | - | - | Detail |
| C1H11g28049 | 11:16,038,713-16,041,285 | + | C2H11g19133 | CX11g014596 | LOC_Os11g31090 | Os11g0507200 | - | Detail |
| C1H11g02002 | 11:16,043,150-16,049,272 | - | C2H11g00051 | CX11g011414 | LOC_Os11g31100 | Os11g0507300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |