| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g13328 | 6:20,925,800-20,926,296 | + | C2H6g05081 | CX6g045873 | LOC_Os06g40320 | - | - | Detail |
| C1H6g07558 | 6:20,950,244-20,952,725 | - | C2H2g00568 | CX6g043962 | LOC_Os06g36640 | - | - | Detail |
| C1H6g27028 | 6:20,961,322-20,966,409 | - | C2H6g16209 | CX6g045451 | LOC_Os06g40330 | Os06g0605600 | OsGAMYBL1 | Detail |
| C1H6g29420 | 6:20,990,101-20,993,209 | + | C2H6g15429 | CX6g045565 | LOC_Os06g40360 | Os06g0605900 | - | Detail |
| C1H6g17045 | 6:20,995,372-21,001,201 | - | C2H6g09935 | CX6g042516 | LOC_Os06g40370 | Os06g0606000 | OsSOS2, OsCIPK24 | Detail |
| C1H6g15800 | 6:21,021,992-21,022,213 | + | C2H2g27937 | - | - | - | - | Detail |
| C1H6g09214 | 6:21,023,415-21,024,098 | - | C2H6g20919 | CX6g042422 | - | Os06g0606401 | - | Detail |
| C1H6g15829 | 6:21,024,243-21,024,786 | - | - | - | - | - | - | Detail |
| C1H6g08688 | 6:21,030,693-21,031,616 | + | C2H6g09266 | CX6g041925 | LOC_Os06g40440 | Os06g0606700 | - | Detail |
| C1H6g08531 | 6:21,032,023-21,036,836 | - | C2H6g06153 | CX6g042680 | LOC_Os06g40450 | Os06g0606800 | - | Detail |
| C1H6g07459 | 6:21,049,181-21,054,276 | + | C2H6g24904 | CX6g042473 | LOC_Os06g40460 | Os06g0606900 | - | Detail |
| C1H6g05934 | 6:21,060,543-21,063,735 | + | C2H6g03860 | CX6g042345 | LOC_Os06g40490 | Os06g0607000 | - | Detail |
| C1H6g31396 | 6:21,075,605-21,078,362 | + | C2H6g09467 | CX6g043327 | LOC_Os06g40500 | Os06g0607100 | OsLP1, PDCT | Detail |
| C1H6g29722 | 6:21,078,963-21,083,241 | - | C2H6g12079 | CX6g041503 | LOC_Os06g40510 | Os06g0607200 | OsSec14-17 | Detail |
| C1H6g21024 | 6:21,092,119-21,099,017 | + | C2H6g21524 | CX6g042337 | LOC_Os06g40550 | Os06g0607700 | ABCG15, OsABCG15 | Detail |
| C1H6g28971 | 6:21,100,119-21,104,097 | + | C2H6g27095 | CX6g041701 | LOC_Os06g40560 | Os06g0607800 | OsRpt4b | Detail |
| C1H6g07985 | 6:21,104,685-21,112,450 | + | C2H6g14041 | CX6g043288 | LOC_Os06g40570 | Os06g0607900 | Osnop | Detail |
| C1H6g07244 | 6:21,112,641-21,113,012 | + | - | CX6g043611 | - | Os06g0608000 | - | Detail |
| C1H6g03303 | 6:21,114,171-21,122,032 | - | C2H6g21336 | CX6g041284 | LOC_Os06g40590 | Os06g0608100 | - | Detail |
| C1H6g06738 | 6:21,122,917-21,123,300 | - | C2H6g21336 | CX6g041284 | LOC_Os06g40590 | Os06g0608100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004171 | 1:9,376,320-9,382,657 | + | C1H1g27658 | C2H1g00434 | LOC_Os01g18584 | Os01g0289600 | - | Detail |
| CX1g002031 | 1:9,394,975-9,395,440 | + | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g002453 | 1:9,409,871-9,411,344 | - | C1H1g31040 | C2H1g15794 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g003482 | 1:9,429,238-9,430,748 | - | C1H1g09358 | C2H1g23760 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| CX1g007116 | 1:9,432,142-9,435,389 | - | C1H1g20536 | C2H1g28620 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| CX1g001189 | 1:9,436,860-9,440,417 | - | C1H1g06449 | C2H1g18032 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| CX1g003793 | 1:9,444,905-9,446,335 | + | C1H1g00431 | C2H1g16260 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| CX1g004035 | 1:9,450,963-9,456,527 | - | C1H1g25669 | C2H1g08075 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| CX1g000920 | 1:9,465,105-9,465,293 | - | - | - | - | - | - | Detail |
| CX1g000346 | 1:9,483,445-9,487,010 | - | C1H1g08871 | C2H1g00537 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| CX1g004226 | 1:9,515,968-9,516,303 | + | C1H11g00629 | C2H11g22859 | LOC_Os07g01114 | Os12g0622200 | - | Detail |
| CX1g000147 | 1:9,556,162-9,560,341 | + | C1H1g01604 | C2H1g10238 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| CX1g001555 | 1:9,569,422-9,570,768 | + | C1H1g22184 | C2H1g11528 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| CX1g002371 | 1:9,574,187-9,579,536 | + | - | - | LOC_Os01g18850 | Os01g0292900 | - | Detail |
| CX1g003929 | 1:9,580,641-9,581,831 | - | C1H1g00008 | C2H1g10329 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| CX1g003845 | 1:9,589,007-9,590,448 | - | C1H1g09181 | C2H1g25441 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| CX1g007204 | 1:9,594,953-9,596,218 | + | - | C2H1g04775 | LOC_Os01g18880 | Os01g0293200 | - | Detail |
| CX1g000276 | 1:9,677,191-9,678,139 | + | C1H1g22230 | - | - | - | - | Detail |
| CX1g004808 | 1:9,677,571-9,678,373 | - | - | - | - | - | - | Detail |
| CX1g007232 | 1:9,679,790-9,681,842 | - | C1H1g31498 | C2H1g02975 | LOC_Os01g19130 | Os01g0295700 | - | Detail |