| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g07891 | 4:19,399,288-19,401,374 | + | C1H4g09691 | CX4g031477 | LOC_Os04g37760 | Os04g0450600 | - | Detail |
| C2H4g24239 | 4:19,403,363-19,403,761 | - | - | - | LOC_Os04g37770 | Os04g0450701 | - | Detail |
| C2H4g24819 | 4:19,413,838-19,414,294 | - | C1H4g11837 | - | - | Os04g0450825 | - | Detail |
| C2H4g02103 | 4:19,417,243-19,419,281 | - | C1H4g03203 | CX4g032253 | LOC_Os04g37790 | Os04g0450900 | - | Detail |
| C2H4g27781 | 4:19,422,469-19,429,361 | + | C1H4g01696 | CX4g033970 | LOC_Os04g37810 | Os04g0451100 | - | Detail |
| C2H4g25963 | 4:19,431,213-19,433,106 | + | C1H4g14124 | CX4g035607 | LOC_Os04g37820 | Os04g0451200 | - | Detail |
| C2H4g13346 | 4:19,442,078-19,442,452 | + | - | CX4g035333 | - | - | - | Detail |
| C2H4g17860 | 4:19,447,558-19,447,824 | + | C1H4g10319 | CX4g033061 | LOC_Os04g37880 | Os04g0451700 | - | Detail |
| C2H4g19666 | 4:19,449,954-19,455,971 | - | C1H4g31154 | CX4g032224 | LOC_Os04g37904 | Os04g0452000 | - | Detail |
| C2H4g00200 | 4:19,464,846-19,469,965 | + | C1H4g12907 | CX4g035297 | LOC_Os04g37920 | Os04g0452100 | OsCRY1b, CRY1b, CRY1 | Detail |
| C2H4g29057 | 4:19,470,265-19,473,343 | - | C1H4g24033 | CX4g036657 | LOC_Os04g38260 | Os04g0452300 | - | Detail |
| C2H4g08692 | 4:19,477,787-19,484,473 | - | C1H4g29737 | CX4g032560 | LOC_Os04g37950 | Os04g0452400 | - | Detail |
| C2H4g06634 | 4:19,488,055-19,495,988 | + | C1H4g02254 | CX4g035909 | LOC_Os04g37960 | Os04g0452500 | ZEP1 | Detail |
| C2H4g14229 | 4:19,498,957-19,500,678 | + | C1H4g22749 | CX4g033774 | LOC_Os04g37970 | Os04g0452600 | OsSTP14 | Detail |
| C2H4g08272 | 4:19,505,317-19,505,927 | + | C1H4g14272 | CX4g036561 | LOC_Os04g37980 | Os04g0452700 | OsMST1, OsSTP1 | Detail |
| C2H4g05982 | 4:19,506,681-19,507,832 | + | C1H4g27712 | CX4g036561 | LOC_Os04g37980 | Os04g0452700 | OsMST1, OsSTP1 | Detail |
| C2H4g04570 | 4:19,508,451-19,508,666 | + | C1H4g28786 | CX4g036561 | LOC_Os04g37980 | Os04g0452700 | OsMST1, OsSTP1 | Detail |
| C2H4g06011 | 4:19,513,495-19,513,677 | + | C1H4g28777 | CX4g034947 | LOC_Os04g37990 | Os04g0453200 | OsSTP15 | Detail |
| C2H4g06218 | 4:19,516,954-19,518,567 | + | C1H4g28777 | CX4g034947 | LOC_Os04g37990 | Os04g0453200 | OsSTP15 | Detail |
| C2H4g08237 | 4:19,541,089-19,541,298 | + | C1H4g15796 | CX4g033029 | LOC_Os04g38000 | Os04g0453300 | OsSTP16 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |