| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g24831 | 5:22,965,867-22,966,685 | + | C2H5g26586 | CX5g036692 | LOC_Os05g48900 | Os05g0563600 | - | Detail |
| C1H5g28795 | 5:22,981,163-22,981,924 | + | C2H5g19965 | CX1g003489 | LOC_Os05g48930 | Os05g0149950 | - | Detail |
| C1H5g01891 | 5:22,986,406-22,990,077 | - | C2H5g30565 | CX5g038036 | LOC_Os05g48940 | Os05g0564000 | - | Detail |
| C1H5g27525 | 5:22,990,659-22,991,333 | + | C2H5g09559 | - | LOC_Os05g48950 | Os05g0564100 | - | Detail |
| C1H5g29642 | 5:22,998,567-22,999,472 | + | C2H5g04888 | CX5g040225 | LOC_Os05g48960 | Os05g0564200 | - | Detail |
| C1H5g01424 | 5:23,002,465-23,009,620 | + | C2H5g15150 | CX5g038798 | LOC_Os05g48970 | Os05g0564300 | - | Detail |
| C1H5g14301 | 5:23,010,037-23,011,783 | - | C2H5g21685 | CX5g039483 | LOC_Os05g48980 | Os05g0564400 | - | Detail |
| C1H5g26322 | 5:23,018,190-23,019,554 | + | C2H5g04875 | CX5g036954 | LOC_Os05g48990 | Os05g0564500 | DWL2, OsWOX9D | Detail |
| C1H5g22531 | 5:23,021,822-23,023,267 | + | C2H5g04875 | CX5g036954 | LOC_Os05g48990 | Os05g0564500 | DWL2, OsWOX9D | Detail |
| C1H5g22284 | 5:23,025,779-23,026,913 | - | C2H5g03360 | CX5g040209 | LOC_Os05g49010 | Os05g0564700 | - | Detail |
| C1H5g11743 | 5:23,029,665-23,031,523 | + | C2H5g08970 | CX5g037646 | LOC_Os05g49020 | Os05g0564800 | - | Detail |
| C1H5g09043 | 5:23,032,027-23,034,181 | + | C2H5g20403 | CX5g037646 | LOC_Os05g49030 | Os05g0565000 | - | Detail |
| C1H5g09274 | 5:23,036,925-23,038,827 | + | C2H5g24526 | CX5g038379 | LOC_Os05g49040 | Os05g0565100 | - | Detail |
| C1H5g19442 | 5:23,039,052-23,041,716 | + | C2H5g06163 | CX5g040804 | LOC_Os05g49050 | Os05g0565200 | - | Detail |
| C1H5g17900 | 5:23,044,938-23,046,877 | - | C2H5g13806 | CX5g038249 | - | - | - | Detail |
| C1H5g08734 | 5:23,048,230-23,051,078 | - | C2H5g19958 | CX5g039855 | LOC_Os05g49060 | Os05g0565400 | - | Detail |
| C1H5g23266 | 5:23,051,535-23,052,473 | - | C2H5g07466 | CX5g040924 | LOC_Os05g49070 | Os05g0565500 | - | Detail |
| C1H5g16562 | 5:23,052,833-23,053,243 | - | C2H5g00600 | CX5g037715 | LOC_Os05g49080 | Os05g0565701 | - | Detail |
| C1H5g03208 | 5:23,070,151-23,073,110 | + | C2H5g29804 | CX5g039821 | LOC_Os05g49100 | Os05g0565900 | - | Detail |
| C1H5g11149 | 5:23,078,040-23,083,585 | + | C2H5g02921 | CX5g036693 | LOC_Os05g49120 | Os05g0566200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |