| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g21575 | 5:14,557,218-14,563,303 | - | C2H5g03996 | CX5g037164 | LOC_Os05g30950 | Os05g0373000 | - | Detail |
| C1H5g18792 | 5:14,570,213-14,576,680 | + | C2H5g03759 | CX5g040615 | LOC_Os05g30970 | Os05g0373300 | OsBON3 | Detail |
| C1H5g29105 | 5:14,588,561-14,593,982 | + | C2H5g18271 | CX5g040352 | LOC_Os05g30980 | Os05g0373400 | - | Detail |
| C1H5g31068 | 5:14,596,057-14,600,780 | - | C2H5g27690 | CX5g038850 | LOC_Os05g30990 | Os05g0373500 | - | Detail |
| C1H5g09200 | 5:14,607,200-14,608,804 | + | C2H5g08611 | CX5g039863 | LOC_Os05g31000 | Os05g0373700 | - | Detail |
| C1H5g04117 | 5:14,614,560-14,618,597 | + | C2H5g03401 | - | - | - | - | Detail |
| C1H5g20196 | 5:14,630,864-14,632,779 | + | C2H5g30069 | CX5g039645 | LOC_Os05g31040 | Os05g0374200 | OsCKX9 | Detail |
| C1H5g11987 | 5:14,641,133-14,651,806 | + | C2H5g03570 | CX5g037517 | LOC_Os05g31056 | Os05g0374600 | - | Detail |
| C1H5g22476 | 5:14,665,010-14,670,853 | - | C2H5g20713 | CX5g039341 | LOC_Os05g31110 | Os05g0375100 | OsHXK10 | Detail |
| C1H5g31731 | 5:14,677,338-14,679,214 | - | C2H5g07936 | CX5g037077 | LOC_Os05g32750 | Os05g0227800 | - | Detail |
| C1H5g21966 | 5:14,689,363-14,694,077 | - | C2H5g21390 | CX5g036757 | LOC_Os05g31140 | Os05g0375400 | OsEGL1 | Detail |
| C1H5g29377 | 5:14,709,932-14,711,512 | - | - | - | - | Os05g0375532 | - | Detail |
| C1H5g26423 | 5:14,710,515-14,713,788 | + | C2H5g07216 | CX5g038239 | LOC_Os05g31160 | Os05g0375600 | - | Detail |
| C1H5g00315 | 5:14,716,982-14,718,400 | - | C2H5g15682 | CX5g039681 | LOC_Os05g31170 | Os05g0375700 | - | Detail |
| C1H5g20894 | 5:14,725,207-14,732,155 | - | C2H5g06087 | CX5g039310 | LOC_Os05g31200 | Os05g0376000 | - | Detail |
| C1H5g02831 | 5:14,734,907-14,741,350 | - | C2H5g11462 | CX5g038768 | LOC_Os05g31254 | Os05g0376600 | - | Detail |
| C1H5g06568 | 5:14,743,016-14,743,763 | - | C2H5g10157 | CX5g038571 | LOC_Os05g31280 | Os05g0376800 | - | Detail |
| C1H5g12763 | 5:14,748,368-14,750,791 | - | C2H5g00006 | CX5g040067 | LOC_Os05g31290 | Os05g0377000 | - | Detail |
| C1H5g27622 | 5:14,768,557-14,768,700 | + | C2H5g17233 | - | LOC_Os05g31370 | - | - | Detail |
| C1H5g14584 | 5:14,771,967-14,773,604 | + | C2H5g14904 | CX5g040971 | LOC_Os05g31380 | Os05g0378200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |