| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02667 | 1:17,159,054-17,161,565 | - | C2H1g17423 | CX1g002054 | LOC_Os01g33050 | Os01g0514000 | - | Detail |
| C1H1g14994 | 1:17,161,996-17,171,769 | + | C2H1g15853 | CX1g000762 | LOC_Os01g33060 | Os01g0514300 | - | Detail |
| C1H1g01968 | 1:17,175,181-17,176,814 | + | C2H1g02122 | CX1g002835 | LOC_Os01g33070 | Os01g0514450 | - | Detail |
| C1H1g23037 | 1:17,186,326-17,192,798 | + | C2H1g28988 | CX1g003510 | LOC_Os01g33080 | Os01g0514600 | - | Detail |
| C1H1g14522 | 1:17,200,755-17,203,722 | + | C2H1g05248 | CX1g002745 | LOC_Os01g33090 | Os01g0514700 | - | Detail |
| C1H1g06127 | 1:17,223,229-17,224,184 | + | C2H1g11864 | - | LOC_Os01g33160 | Os01g0516200 | - | Detail |
| C1H1g07615 | 1:17,224,889-17,225,434 | + | C2H1g16479 | - | LOC_Os01g33160 | Os01g0516200 | - | Detail |
| C1H1g14011 | 1:17,240,538-17,242,659 | - | C2H1g29780 | CX1g001599 | - | Os01g0298301 | - | Detail |
| C1H1g03884 | 1:17,244,570-17,246,456 | + | C2H1g11260 | - | LOC_Os01g33160 | Os01g0516600 | - | Detail |
| C1H1g13083 | 1:17,250,707-17,257,482 | - | C2H1g29427 | CX1g000632 | LOC_Os01g33230 | Os01g0516700 | - | Detail |
| C1H1g03571 | 1:17,261,594-17,274,876 | - | C2H1g22414 | CX1g005992 | LOC_Os01g33260 | Os01g0516900 | - | Detail |
| C1H1g26291 | 1:17,297,599-17,299,036 | - | C2H1g00935 | CX1g004281 | LOC_Os01g33300 | Os01g0517500 | OsPG2 | Detail |
| C1H1g15043 | 1:17,308,822-17,310,056 | - | C2H1g19175 | CX1g001381 | LOC_Os01g33350 | Os01g0517800 | OsFl3 | Detail |
| C1H1g16914 | 1:17,313,657-17,315,712 | + | C2H1g11828 | CX1g005386 | LOC_Os01g33360 | Os01g0517900 | - | Detail |
| C1H1g19776 | 1:17,319,043-17,320,708 | - | C2H1g06564 | CX1g001381 | LOC_Os01g33370 | Os01g0518000 | - | Detail |
| C1H1g04145 | 1:17,350,644-17,355,164 | - | C2H1g15782 | CX1g004547 | LOC_Os01g33400 | Os01g0519700 | - | Detail |
| C1H1g01073 | 1:17,362,482-17,369,624 | - | C2H1g11609 | CX1g000474 | LOC_Os01g33420 | Os01g0518500 | - | Detail |
| C1H1g03032 | 1:17,370,451-17,371,783 | + | C2H1g02009 | CX1g001414 | - | - | - | Detail |
| C1H1g14202 | 1:17,375,241-17,385,536 | - | C2H1g08274 | CX1g003150 | - | Os01g0518651 | - | Detail |
| C1H1g06909 | 1:17,390,080-17,390,476 | - | C2H1g08445 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |