| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18808 | 3:3,411,889-3,412,293 | - | C2H3g19552 | CX3g028336 | LOC_Os03g07620 | Os03g0172400 | - | Detail |
| C1H3g04232 | 3:3,419,658-3,420,041 | - | C2H3g20603 | CX3g028336 | LOC_Os03g07650 | Os03g0172700 | - | Detail |
| C1H3g13321 | 3:3,422,618-3,422,980 | - | C2H3g08092 | CX10g010744 | LOC_Os03g07660 | Os03g0172850 | - | Detail |
| C1H3g01518 | 3:3,426,451-3,426,804 | - | C2H3g24701 | CX10g010744 | LOC_Os03g07700 | Os03g0172850 | - | Detail |
| C1H3g31090 | 3:3,428,162-3,431,418 | - | C2H3g29081 | CX3g029368 | LOC_Os03g07750 | Os03g0173700 | - | Detail |
| C1H3g10638 | 3:3,439,094-3,444,353 | + | C2H3g18822 | CX3g027068 | LOC_Os03g07790 | Os03g0173900 | - | Detail |
| C1H3g26619 | 3:3,447,773-3,452,055 | + | C2H3g19744 | CX3g029718 | LOC_Os03g07800 | Os03g0174100 | - | Detail |
| C1H3g13737 | 3:3,452,685-3,454,772 | + | C2H3g27947 | CX3g031172 | LOC_Os03g07810 | Os03g0174200 | - | Detail |
| C1H3g17195 | 3:3,456,803-3,460,853 | + | C2H3g27809 | CX3g026937 | LOC_Os03g07820 | Os03g0174300 | - | Detail |
| C1H3g25841 | 3:3,462,471-3,463,418 | + | C2H3g11391 | CX3g026624 | LOC_Os03g07830 | Os03g0174400 | - | Detail |
| C1H3g25794 | 3:3,464,293-3,467,562 | - | C2H3g04037 | CX3g028234 | LOC_Os03g07840 | Os03g0174500 | - | Detail |
| C1H3g00615 | 3:3,467,678-3,473,187 | + | C2H3g05342 | CX3g028498 | LOC_Os03g07850 | Os03g0174600 | - | Detail |
| C1H3g07752 | 3:3,474,742-3,474,942 | - | C2H3g04138 | CX3g027678 | LOC_Os03g07870 | Os03g0174800 | - | Detail |
| C1H3g05067 | 3:3,476,912-3,480,194 | - | C2H3g01619 | CX3g030931 | LOC_Os03g07880 | Os03g0174900 | OsNF-YA1, HAP2C | Detail |
| C1H3g04156 | 3:3,488,872-3,489,864 | + | C2H3g14257 | CX3g031308 | LOC_Os03g07890 | Os03g0175200 | - | Detail |
| C1H3g18648 | 3:3,495,618-3,495,941 | + | C2H3g21508 | CX3g030291 | - | - | - | Detail |
| C1H3g26233 | 3:3,496,835-3,500,853 | + | C2H3g07896 | CX3g025046 | LOC_Os03g07910 | Os03g0175600 | - | Detail |
| C1H3g08447 | 3:3,509,939-3,511,804 | - | C2H3g28877 | CX3g027383 | LOC_Os03g07920 | Os03g0175800 | BG1 | Detail |
| C1H3g27866 | 3:3,519,413-3,521,653 | + | C2H3g25222 | CX3g031114 | LOC_Os03g07930 | Os03g0176100 | - | Detail |
| C1H3g15288 | 3:3,523,571-3,524,565 | - | C2H3g11134 | CX3g025943 | LOC_Os03g07940 | Os03g0232200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |