| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g02272 | 12:14,139,391-14,143,098 | - | C2H12g15729 | CX12g018094 | LOC_Os12g27220 | Os12g0458100 | - | Detail |
| C1H12g18821 | 12:14,168,455-14,175,226 | - | C2H12g06376 | CX12g018094 | LOC_Os12g27254 | Os12g0458100 | - | Detail |
| C1H12g10895 | 12:14,178,345-14,178,796 | + | - | - | - | - | - | Detail |
| C1H12g15735 | 12:14,236,779-14,239,065 | - | C2H12g20196 | CX12g016893 | LOC_Os12g27350 | Os12g0459100 | - | Detail |
| C1H12g17860 | 12:14,252,020-14,261,034 | + | - | - | - | - | - | Detail |
| C1H12g05201 | 12:14,302,711-14,303,364 | + | C2H12g01706 | CX12g017942 | LOC_Os12g27440 | Os12g0460100 | - | Detail |
| C1H12g24783 | 12:14,352,870-14,353,562 | + | C2H12g06459 | CX12g018706 | LOC_Os12g27470 | Os12g0460400 | - | Detail |
| C1H12g15830 | 12:14,386,639-14,390,003 | - | C2H12g17065 | CX12g016743 | LOC_Os12g27520 | Os12g0460800 | - | Detail |
| C1H12g08576 | 12:14,397,058-14,397,314 | - | - | - | - | - | - | Detail |
| C1H12g21553 | 12:14,413,866-14,414,612 | - | C2H12g15845 | CX12g015249 | LOC_Os12g27640 | Os12g0461300 | - | Detail |
| C1H12g17942 | 12:14,486,764-14,488,194 | + | C2H12g13285 | CX12g015075 | LOC_Os12g27790 | Os12g0464300 | - | Detail |
| C1H12g24196 | 12:14,496,101-14,497,486 | + | C2H12g13517 | CX12g015075 | LOC_Os12g27810 | Os12g0464300 | - | Detail |
| C1H12g20928 | 12:14,502,532-14,504,923 | + | C2H12g01667 | CX12g016423 | LOC_Os12g27830 | Os12g0464400 | - | Detail |
| C1H12g16659 | 12:14,513,332-14,514,060 | + | C2H12g23283 | CX12g015400 | LOC_Os12g27850 | Os12g0465000 | - | Detail |
| C1H12g04307 | 12:14,531,052-14,531,786 | + | C2H12g13573 | CX12g015400 | LOC_Os12g27930 | Os12g0465000 | - | Detail |
| C1H12g22166 | 12:14,539,676-14,540,207 | + | C2H12g04383 | CX12g015400 | LOC_Os12g27940 | Os12g0465100 | - | Detail |
| C1H12g19521 | 12:14,543,010-14,543,354 | + | C2H12g28192 | - | LOC_Os12g27950 | Os12g0465100 | - | Detail |
| C1H12g13640 | 12:14,550,095-14,550,664 | + | C2H12g07320 | - | LOC_Os12g27960 | Os12g0465100 | - | Detail |
| C1H12g17057 | 12:14,559,489-14,565,193 | - | C2H12g28215 | CX12g018630 | LOC_Os12g27994 | Os12g0465700 | DEC, dec*, dec | Detail |
| C1H12g19519 | 12:14,565,367-14,567,101 | - | C2H12g24524 | CX12g015187 | LOC_Os12g27994 | Os12g0465800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |