| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g29598 | 9:9,987,154-9,992,163 | + | C2H9g06733 | CX9g057137 | LOC_Os09g19830 | Os09g0362900 | - | Detail |
| C1H9g06456 | 9:9,998,582-10,003,189 | + | C2H9g18853 | CX9g055594 | LOC_Os09g19850 | Os09g0363100 | AL2 | Detail |
| C1H9g17470 | 9:10,003,276-10,009,703 | + | C2H9g21274 | CX9g054946 | LOC_Os09g19880 | Os09g0363400 | - | Detail |
| C1H9g09576 | 9:10,011,993-10,015,658 | + | C2H9g19173 | CX9g055913 | LOC_Os09g19890 | Os09g0363500 | - | Detail |
| C1H9g19156 | 9:10,017,106-10,020,441 | - | C2H9g30170 | CX9g056843 | LOC_Os09g19900 | Os09g0363600 | - | Detail |
| C1H9g05940 | 9:10,021,808-10,023,145 | - | C2H9g24242 | CX9g056665 | LOC_Os09g19910 | Os09g0363700 | - | Detail |
| C1H9g13676 | 9:10,024,239-10,027,965 | + | C2H9g24130 | CX9g057760 | LOC_Os09g19920 | Os09g0363800 | - | Detail |
| C1H9g20675 | 9:10,027,843-10,034,266 | - | C2H9g06894 | CX9g055111 | LOC_Os09g19930 | Os09g0363900 | ONI3 | Detail |
| C1H9g06801 | 9:10,045,482-10,047,298 | + | C2H9g24304 | CX9g058154 | LOC_Os09g19940 | Os09g0364000 | - | Detail |
| C1H9g25007 | 9:10,050,355-10,051,461 | + | - | CX9g055190 | LOC_Os09g19950 | Os09g0364100 | - | Detail |
| C1H9g15961 | 9:10,057,125-10,057,901 | + | - | CX9g055904 | LOC_Os09g19970 | Os09g0364400 | - | Detail |
| C1H9g01896 | 9:10,059,074-10,062,091 | + | C2H9g26597 | CX9g055401 | LOC_Os09g19980 | Os09g0364500 | - | Detail |
| C1H9g22808 | 9:10,072,217-10,073,287 | + | C2H9g05953 | CX9g055642 | LOC_Os09g20000 | Os09g0364800 | - | Detail |
| C1H9g18906 | 9:10,085,555-10,086,658 | + | C2H9g17518 | CX9g054992 | LOC_Os09g20010 | Os09g0364900 | - | Detail |
| C1H9g09897 | 9:10,127,643-10,132,263 | - | C2H9g05844 | CX9g055654 | LOC_Os09g20090 | Os09g0365900 | OsORAP1, OsAAO4 | Detail |
| C1H9g15571 | 9:10,216,321-10,217,602 | - | C2H9g09091 | CX9g054852 | LOC_Os09g20200 | - | - | Detail |
| C1H9g30784 | 9:10,228,975-10,229,292 | + | - | - | - | - | - | Detail |
| C1H9g02207 | 9:10,229,355-10,229,974 | + | C2H9g29920 | CX9g056871 | LOC_Os09g20240 | Os09g0367900 | - | Detail |
| C1H9g30662 | 9:10,249,689-10,251,212 | - | C2H9g28312 | CX9g056709 | LOC_Os09g20260 | Os09g0368200 | - | Detail |
| C1H9g08171 | 9:10,253,525-10,254,719 | - | C2H9g01995 | CX9g056709 | LOC_Os09g20284 | Os09g0368200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |