| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00597 | 1:29,442,348-29,444,656 | - | C2H1g21701 | CX1g000978 | LOC_Os01g56890 | Os01g0776700 | - | Detail |
| C1H1g11210 | 1:29,447,652-29,456,572 | + | C2H1g20224 | CX1g004792 | LOC_Os01g56910 | Os01g0777000 | - | Detail |
| C1H1g12823 | 1:29,464,686-29,469,841 | + | C2H1g02819 | CX1g004121 | LOC_Os01g56930 | Os01g0777200 | - | Detail |
| C1H1g24617 | 1:29,471,174-29,477,913 | + | C2H1g01868 | CX1g002623 | LOC_Os01g56940 | Os01g0777300 | OsEXO1 | Detail |
| C1H1g21107 | 1:29,478,388-29,480,001 | + | C2H1g09096 | CX1g005425 | LOC_Os01g56969 | Os01g0777400 | - | Detail |
| C1H1g01416 | 1:29,480,666-29,497,143 | - | C2H1g05939 | CX1g003121 | LOC_Os01g56980 | Os01g0777700 | - | Detail |
| C1H1g17868 | 1:29,500,465-29,504,032 | - | C2H1g00497 | CX1g001773 | LOC_Os01g56990 | Os01g0777800 | - | Detail |
| C1H1g03573 | 1:29,505,552-29,511,629 | + | C2H1g03254 | CX1g000485 | LOC_Os01g57020 | Os01g0778100 | - | Detail |
| C1H1g21965 | 1:29,514,322-29,514,528 | + | C2H1g02451 | - | LOC_Os01g57030 | - | - | Detail |
| C1H1g05620 | 1:29,516,277-29,516,465 | - | - | - | - | - | - | Detail |
| C1H1g29247 | 1:29,517,851-29,518,316 | - | C2H1g01479 | CX1g004182 | LOC_Os01g57050 | Os01g0778500 | - | Detail |
| C1H1g15889 | 1:29,531,797-29,538,286 | + | C2H1g17230 | CX1g000574 | LOC_Os01g57066 | Os01g0778700 | - | Detail |
| C1H1g04670 | 1:29,539,495-29,550,967 | + | C2H1g28934 | CX1g003174 | LOC_Os01g57073 | Os01g0778800 | - | Detail |
| C1H1g30175 | 1:29,551,103-29,551,342 | - | - | CX1g003472 | - | Os01g0778900 | - | Detail |
| C1H1g03962 | 1:29,556,930-29,565,462 | + | C2H1g28562 | CX1g003351 | LOC_Os01g57073 | Os01g0779100 | - | Detail |
| C1H1g22178 | 1:29,566,855-29,567,869 | + | C2H1g28562 | CX1g003351 | LOC_Os01g57082 | Os01g0779100 | - | Detail |
| C1H1g29302 | 1:29,570,592-29,572,718 | + | C2H1g25383 | CX1g005629 | LOC_Os01g57100 | Os01g0779300 | - | Detail |
| C1H1g04257 | 1:29,573,701-29,583,882 | - | C2H1g18551 | CX1g001051 | LOC_Os01g57110 | Os01g0779400 | OsCHR706, CHR706, ALT1 | Detail |
| C1H1g31795 | 1:29,592,410-29,593,249 | - | C2H5g11517 | CX1g005392 | LOC_Os01g57150 | Os01g0779800 | - | Detail |
| C1H1g30935 | 1:29,612,400-29,622,246 | + | C2H1g09740 | CX1g001431 | LOC_Os01g57210 | Os01g0780400 | OsKTN80c | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001111 | 1:9,139,895-9,142,254 | - | C1H1g13588 | C2H1g07308 | LOC_Os01g18220 | Os01g0284900 | - | Detail |
| CX1g003253 | 1:9,154,218-9,155,017 | - | C1H1g17641 | C2H1g20440 | LOC_Os01g18230 | - | - | Detail |
| CX1g000625 | 1:9,155,562-9,155,729 | - | - | - | - | - | - | Detail |
| CX1g005501 | 1:9,157,145-9,157,489 | + | - | - | - | Os01g0285200 | - | Detail |
| CX1g006251 | 1:9,163,953-9,165,454 | - | C1H1g06479 | C2H1g10789 | LOC_Os01g18240 | Os01g0285300 | MYB61, OsMYB55/61, JMTF1 | Detail |
| CX1g003004 | 1:9,196,756-9,197,046 | + | - | - | - | - | - | Detail |
| CX1g001682 | 1:9,207,395-9,208,250 | - | - | - | - | - | - | Detail |
| CX1g000217 | 1:9,210,726-9,213,937 | + | C1H1g05697 | C2H1g03219 | LOC_Os01g18280 | Os01g0286000 | - | Detail |
| CX1g006989 | 1:9,219,733-9,223,064 | - | C1H1g18723 | C2H1g23388 | LOC_Os01g13460 | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| CX1g003303 | 1:9,236,156-9,236,380 | - | - | - | - | - | - | Detail |
| CX1g001405 | 1:9,238,010-9,239,081 | - | C1H1g02909 | C2H1g25947 | - | - | - | Detail |
| CX1g004036 | 1:9,243,723-9,246,982 | + | C1H1g02936 | C2H1g13264 | LOC_Os01g18320 | Os01g0286600 | OsPPO1 | Detail |
| CX1g000296 | 1:9,259,784-9,263,080 | + | C1H1g02001 | C2H1g18493 | LOC_Os01g18360 | Os01g0286900 | - | Detail |
| CX1g003580 | 1:9,282,703-9,282,876 | - | - | - | - | - | - | Detail |
| CX1g002314 | 1:9,285,356-9,285,691 | + | C1H1g26094 | C2H1g16973 | LOC_Os01g18375 | Os07g0635900 | OsLti6a | Detail |
| CX1g007034 | 1:9,287,998-9,289,577 | - | C1H1g26001 | C2H1g10428 | LOC_Os01g18400 | Os01g0287600 | - | Detail |
| CX1g003773 | 1:9,296,581-9,296,872 | - | - | - | - | - | - | Detail |
| CX1g005603 | 1:9,324,091-9,324,451 | - | C1H1g01375 | C2H1g21581 | LOC_Os01g18450 | Os01g0288200 | - | Detail |
| CX1g002404 | 1:9,330,685-9,330,861 | - | - | - | - | - | - | Detail |
| CX1g005164 | 1:9,338,954-9,339,346 | + | - | - | - | Os01g0288700 | - | Detail |