| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02875 | 4:26,302,924-26,308,851 | - | C2H4g27441 | CX4g033004 | LOC_Os04g51060 | Os02g0700000 | - | Detail |
| C1H4g14973 | 4:26,312,350-26,314,658 | - | C2H4g22306 | CX4g034139 | LOC_Os04g51070 | Os04g0599300 | EAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD | Detail |
| C1H4g26976 | 4:26,320,393-26,326,056 | + | C2H4g03863 | CX4g034652 | LOC_Os04g51080 | Os04g0599400 | - | Detail |
| C1H4g19631 | 4:26,329,325-26,343,393 | + | C2H4g03311 | CX4g033723 | LOC_Os04g51090 | Os04g0599650 | - | Detail |
| C1H4g29659 | 4:26,344,218-26,347,164 | + | C2H4g27597 | CX4g035416 | LOC_Os04g51100 | Os04g0599700 | - | Detail |
| C1H4g20555 | 4:26,347,861-26,350,745 | + | C2H4g20047 | CX4g033831 | LOC_Os04g51110 | Os04g0599800 | CDC20.1 | Detail |
| C1H4g01630 | 4:26,351,212-26,356,239 | + | C2H4g05473 | CX4g035744 | LOC_Os04g51120 | Os04g0599900 | - | Detail |
| C1H4g04836 | 4:26,358,923-26,360,679 | + | C2H4g10442 | CX4g035030 | LOC_Os04g51130 | Os04g0600000 | - | Detail |
| C1H4g15893 | 4:26,361,500-26,362,604 | - | C2H4g25284 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C1H4g02523 | 4:26,362,851-26,365,153 | - | C2H4g12319 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C1H4g17466 | 4:26,365,907-26,367,375 | - | C2H4g13155 | - | - | - | - | Detail |
| C1H4g06092 | 4:26,367,600-26,368,805 | - | C2H4g13155 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C1H4g28733 | 4:26,370,683-26,372,967 | - | C2H4g11382 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C1H4g27697 | 4:26,373,814-26,374,512 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g04973 | 4:26,374,598-26,379,006 | - | C2H4g16073 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C1H4g07853 | 4:26,386,694-26,391,407 | - | C2H4g00138 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C1H4g08504 | 4:26,392,836-26,396,991 | - | C2H4g09942 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C1H4g18677 | 4:26,408,952-26,410,318 | - | C2H4g25560 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C1H4g11359 | 4:26,411,776-26,413,423 | - | C2H4g10254 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C1H4g04413 | 4:26,413,308-26,414,261 | + | C2H4g14874 | CX4g034624 | LOC_Os04g51290 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020740 | 2:4,442,164-4,442,763 | - | C1H2g12021 | C2H2g10301 | LOC_Os02g09650 | Os02g0797100 | - | Detail |
| CX2g022600 | 2:4,450,072-4,458,118 | - | C1H2g06467 | C2H2g02506 | LOC_Os02g09720 | Os02g0189800 | - | Detail |
| CX2g020515 | 2:4,464,752-4,465,368 | - | - | - | - | - | - | Detail |
| CX2g021632 | 2:4,481,552-4,489,913 | - | C1H2g16474 | C2H2g18329 | LOC_Os02g09720 | Os02g0190000 | - | Detail |
| CX2g021192 | 2:4,496,421-4,505,456 | - | C1H2g04187 | C2H2g18329 | LOC_Os02g09720 | Os02g0190300 | - | Detail |
| CX2g021402 | 2:4,503,707-4,505,031 | + | - | - | - | Os02g0190200 | - | Detail |
| CX2g022054 | 2:4,529,813-4,534,914 | + | C1H2g21943 | C2H2g06769 | LOC_Os02g09740 | Os02g0190500 | - | Detail |
| CX2g022421 | 2:4,535,977-4,537,446 | - | C1H2g24836 | - | LOC_Os02g09750 | Os02g0190600 | OsLCYbeta, OsLCYβ | Detail |
| CX2g023142 | 2:4,540,617-4,541,195 | - | C1H2g15779 | C2H2g16178 | LOC_Os02g09760 | Os02g0190700 | - | Detail |
| CX2g021348 | 2:4,546,071-4,550,047 | - | C1H2g04808 | C2H2g05420 | LOC_Os02g09770 | Os02g0190800 | - | Detail |
| CX2g020459 | 2:4,552,465-4,553,889 | - | C1H2g13385 | C2H2g18343 | LOC_Os02g09780 | Os02g0190900 | - | Detail |
| CX2g024106 | 2:4,556,775-4,559,516 | - | C1H2g24338 | C2H2g12907 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| CX2g022282 | 2:4,570,530-4,573,262 | - | C1H2g24338 | C2H2g20012 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| CX2g022425 | 2:4,576,716-4,577,221 | - | - | - | - | Os02g0191250 | - | Detail |
| CX2g024733 | 2:4,576,857-4,578,827 | + | C1H2g19462 | C2H2g13140 | LOC_Os02g09800 | Os02g0191200 | - | Detail |
| CX2g019369 | 2:4,581,421-4,584,270 | - | C1H2g16598 | C2H2g19527 | LOC_Os02g09810 | Os02g0191300 | OsATL6 | Detail |
| CX2g021648 | 2:4,587,956-4,590,131 | + | C1H2g02472 | C2H2g07551 | LOC_Os02g09820 | Os02g0191500 | - | Detail |
| CX2g022552 | 2:4,591,285-4,591,794 | - | C1H2g05141 | C2H2g25351 | LOC_Os02g09830 | Os02g0191600 | OsbZIP16 | Detail |
| CX2g024871 | 2:4,595,857-4,599,298 | - | C1H2g12750 | C2H2g25953 | LOC_Os02g09840 | Os02g0191700 | - | Detail |
| CX2g022394 | 2:4,602,938-4,603,357 | - | C1H2g24745 | - | LOC_Os02g09850 | Os02g0191800 | - | Detail |