| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23946 | 5:24,298,161-24,299,642 | + | C2H5g15674 | - | LOC_Os05g51650 | Os05g0594900 | - | Detail |
| C1H5g07547 | 5:24,299,970-24,300,566 | - | C2H5g18619 | CX5g039507 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| C1H5g22966 | 5:24,306,790-24,310,218 | + | C2H5g04566 | CX5g037190 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| C1H5g29705 | 5:24,314,276-24,338,423 | + | C2H5g00689 | CX5g037572 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| C1H5g17200 | 5:24,314,364-24,315,098 | - | C2H5g03425 | CX5g039657 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| C1H5g10995 | 5:24,338,704-24,341,533 | - | C2H5g25216 | CX5g038125 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| C1H5g27674 | 5:24,342,371-24,344,469 | - | C2H5g14814 | CX5g041076 | LOC_Os05g51710 | Os05g0595500 | - | Detail |
| C1H5g24835 | 5:24,350,690-24,354,556 | - | C2H5g23094 | CX5g037161 | LOC_Os05g51740 | Os05g0595800 | - | Detail |
| C1H5g11204 | 5:24,357,393-24,357,937 | - | C2H5g15029 | CX5g037472 | LOC_Os05g45954 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C1H5g19628 | 5:24,359,119-24,360,738 | + | C2H5g10878 | CX5g037109 | LOC_Os05g51750 | Os05g0596000 | - | Detail |
| C1H5g15344 | 5:24,362,940-24,363,852 | - | C2H5g03677 | CX5g040213 | LOC_Os05g51754 | Os05g0596200 | - | Detail |
| C1H5g05425 | 5:24,370,389-24,371,543 | + | C2H5g02505 | CX5g038377 | LOC_Os05g51780 | Os05g0596500 | - | Detail |
| C1H5g04142 | 5:24,380,267-24,392,932 | - | C2H5g19295 | CX5g038266 | LOC_Os05g51790 | Os05g0596600 | OsSMC5 | Detail |
| C1H5g09886 | 5:24,394,335-24,397,839 | + | C2H5g24076 | CX5g040422 | LOC_Os05g51800 | Os05g0596700 | - | Detail |
| C1H5g06124 | 5:24,399,765-24,400,578 | + | C2H5g17322 | CX5g039358 | LOC_Os05g51820 | Os05g0597000 | OsMUTE | Detail |
| C1H5g15760 | 5:24,403,463-24,406,171 | - | C2H5g24478 | CX5g038345 | LOC_Os05g51830 | Os05g0597100 | HDT1, OsHDT1, HDT701 | Detail |
| C1H5g16210 | 5:24,406,864-24,410,928 | - | C2H5g14678 | CX5g038501 | LOC_Os05g51850 | Os05g0597200 | - | Detail |
| C1H5g10848 | 5:24,413,074-24,414,807 | + | C2H5g20513 | CX5g040358 | LOC_Os05g51860 | Os05g0597400 | - | Detail |
| C1H5g07885 | 5:24,443,447-24,443,701 | - | C2H5g12335 | CX5g039366 | LOC_Os05g51900 | Os05g0597700 | - | Detail |
| C1H6g09491 | 6:33,828-40,991 | + | C2H6g15066 | CX6g041728 | LOC_Os06g01170 | Os06g0101000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020740 | 2:4,442,164-4,442,763 | - | C1H2g12021 | C2H2g10301 | LOC_Os02g09650 | Os02g0797100 | - | Detail |
| CX2g022600 | 2:4,450,072-4,458,118 | - | C1H2g06467 | C2H2g02506 | LOC_Os02g09720 | Os02g0189800 | - | Detail |
| CX2g020515 | 2:4,464,752-4,465,368 | - | - | - | - | - | - | Detail |
| CX2g021632 | 2:4,481,552-4,489,913 | - | C1H2g16474 | C2H2g18329 | LOC_Os02g09720 | Os02g0190000 | - | Detail |
| CX2g021192 | 2:4,496,421-4,505,456 | - | C1H2g04187 | C2H2g18329 | LOC_Os02g09720 | Os02g0190300 | - | Detail |
| CX2g021402 | 2:4,503,707-4,505,031 | + | - | - | - | Os02g0190200 | - | Detail |
| CX2g022054 | 2:4,529,813-4,534,914 | + | C1H2g21943 | C2H2g06769 | LOC_Os02g09740 | Os02g0190500 | - | Detail |
| CX2g022421 | 2:4,535,977-4,537,446 | - | C1H2g24836 | - | LOC_Os02g09750 | Os02g0190600 | OsLCYbeta, OsLCYβ | Detail |
| CX2g023142 | 2:4,540,617-4,541,195 | - | C1H2g15779 | C2H2g16178 | LOC_Os02g09760 | Os02g0190700 | - | Detail |
| CX2g021348 | 2:4,546,071-4,550,047 | - | C1H2g04808 | C2H2g05420 | LOC_Os02g09770 | Os02g0190800 | - | Detail |
| CX2g020459 | 2:4,552,465-4,553,889 | - | C1H2g13385 | C2H2g18343 | LOC_Os02g09780 | Os02g0190900 | - | Detail |
| CX2g024106 | 2:4,556,775-4,559,516 | - | C1H2g24338 | C2H2g12907 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| CX2g022282 | 2:4,570,530-4,573,262 | - | C1H2g24338 | C2H2g20012 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| CX2g022425 | 2:4,576,716-4,577,221 | - | - | - | - | Os02g0191250 | - | Detail |
| CX2g024733 | 2:4,576,857-4,578,827 | + | C1H2g19462 | C2H2g13140 | LOC_Os02g09800 | Os02g0191200 | - | Detail |
| CX2g019369 | 2:4,581,421-4,584,270 | - | C1H2g16598 | C2H2g19527 | LOC_Os02g09810 | Os02g0191300 | OsATL6 | Detail |
| CX2g021648 | 2:4,587,956-4,590,131 | + | C1H2g02472 | C2H2g07551 | LOC_Os02g09820 | Os02g0191500 | - | Detail |
| CX2g022552 | 2:4,591,285-4,591,794 | - | C1H2g05141 | C2H2g25351 | LOC_Os02g09830 | Os02g0191600 | OsbZIP16 | Detail |
| CX2g024871 | 2:4,595,857-4,599,298 | - | C1H2g12750 | C2H2g25953 | LOC_Os02g09840 | Os02g0191700 | - | Detail |
| CX2g022394 | 2:4,602,938-4,603,357 | - | C1H2g24745 | - | LOC_Os02g09850 | Os02g0191800 | - | Detail |