| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g29067 | 3:29,881,308-29,882,118 | + | C2H3g12840 | CX3g028014 | LOC_Os03g56160 | Os03g0772600 | - | Detail |
| C1H3g22167 | 3:29,884,694-29,885,360 | + | C2H3g23317 | CX3g028800 | LOC_Os03g56130 | Os03g0669300 | - | Detail |
| C1H3g26236 | 3:29,891,223-29,896,116 | + | C2H3g12690 | CX3g025388 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| C1H3g06172 | 3:29,910,518-29,912,059 | + | C2H3g15287 | CX3g028141 | LOC_Os03g56190 | Os03g0772800 | - | Detail |
| C1H3g27520 | 3:29,931,113-29,937,034 | - | C2H3g23997 | CX3g029781 | LOC_Os03g56234 | Os03g0773100 | - | Detail |
| C1H3g12061 | 3:29,939,988-29,944,559 | - | C2H3g30456 | CX3g031131 | LOC_Os03g56250 | Os03g0773300 | - | Detail |
| C1H3g19745 | 3:29,955,768-29,963,615 | + | C2H3g15647 | CX3g027730 | LOC_Os03g56260 | Os03g0773600 | - | Detail |
| C1H3g13238 | 3:29,971,181-29,975,252 | + | C2H3g25453 | CX3g029516 | LOC_Os03g56270 | Os03g0773700 | - | Detail |
| C1H3g14912 | 3:29,978,851-29,982,138 | - | C2H3g25804 | CX3g025155 | LOC_Os03g56280 | Os03g0773800 | - | Detail |
| C1H3g03566 | 3:29,983,202-29,986,516 | - | C2H3g28843 | CX3g026775 | LOC_Os03g56300 | Os03g0774200 | - | Detail |
| C1H3g22996 | 3:29,987,527-29,994,806 | - | C2H3g04435 | CX3g031127 | LOC_Os03g56310 | Os03g0774300 | - | Detail |
| C1H3g19261 | 3:29,997,987-29,999,698 | + | C2H3g26015 | CX3g025412 | LOC_Os03g56320 | Os03g0774400 | - | Detail |
| C1H3g10204 | 3:30,014,437-30,015,072 | - | C2H3g25248 | CX3g027698 | LOC_Os03g56370 | Os03g0775000 | - | Detail |
| C1H3g07173 | 3:30,016,108-30,016,990 | - | C2H3g25248 | CX3g027698 | LOC_Os03g56370 | Os03g0775000 | - | Detail |
| C1H3g14191 | 3:30,019,407-30,023,914 | + | C2H3g05048 | CX3g026008 | LOC_Os03g56380 | Os03g0775200 | - | Detail |
| C1H3g27485 | 3:30,024,625-30,028,017 | + | C2H3g23811 | CX3g026938 | LOC_Os03g56390 | Os03g0775300 | - | Detail |
| C1H3g13212 | 3:30,028,349-30,030,760 | - | C2H3g12716 | CX3g030898 | LOC_Os03g56400 | Os03g0775400 | - | Detail |
| C1H3g05680 | 3:30,031,592-30,035,139 | + | C2H3g27854 | CX3g030889 | LOC_Os03g56410 | Os03g0775500 | - | Detail |
| C1H3g30894 | 3:30,038,646-30,041,365 | + | C2H3g25642 | CX3g030664 | LOC_Os03g56420 | Os03g0775600 | - | Detail |
| C1H3g19822 | 3:30,042,628-30,046,246 | + | C2H3g18914 | CX3g029071 | LOC_Os03g56430 | Os03g0775700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022399 | 2:3,844,651-3,846,658 | - | C1H2g09345 | C2H2g12176 | LOC_Os02g08310 | Os02g0179400 | - | Detail |
| CX2g020585 | 2:3,853,439-3,857,402 | + | C1H2g30953 | C2H2g24288 | LOC_Os02g08320 | Os02g0179500 | - | Detail |
| CX2g020007 | 2:3,858,484-3,860,469 | - | C1H2g15298 | - | LOC_Os02g08330 | Os02g0179600 | - | Detail |
| CX2g020510 | 2:3,862,703-3,867,714 | - | C1H2g23751 | C2H2g01634 | LOC_Os02g08350 | Os02g0179800 | - | Detail |
| CX2g023636 | 2:3,869,823-3,878,213 | + | C1H2g17009 | C2H2g05800 | LOC_Os02g08360 | Os02g0179900 | - | Detail |
| CX2g023036 | 2:3,873,368-3,873,719 | - | - | - | - | Os02g0179950 | - | Detail |
| CX2g019636 | 2:3,881,555-3,884,206 | + | C1H2g04017 | C2H2g08895 | LOC_Os02g08364 | Os02g0180000 | - | Detail |
| CX2g022824 | 2:3,885,102-3,886,549 | - | C1H2g13865 | C2H2g28931 | LOC_Os02g08370 | Os02g0180100 | - | Detail |
| CX2g023398 | 2:3,889,333-3,892,535 | + | C1H2g02146 | C2H2g25419 | LOC_Os02g08380 | Os02g0180200 | LA2, LTA1 | Detail |
| CX2g022601 | 2:3,908,140-3,909,743 | + | C1H2g01164 | C2H2g28103 | LOC_Os02g08400 | Os02g0180400 | HHC2 | Detail |
| CX2g022893 | 2:3,913,167-3,915,472 | - | C1H2g08033 | C2H2g19969 | LOC_Os02g08410 | Os02g0180500 | - | Detail |
| CX2g022487 | 2:3,919,740-3,922,740 | + | C1H2g12941 | C2H2g21393 | LOC_Os02g08420 | Os02g0180700 | OsCCR21 | Detail |
| CX2g019488 | 2:3,954,898-3,955,137 | + | - | - | - | Os02g0180900 | - | Detail |
| CX2g020326 | 2:3,975,216-3,976,612 | + | C1H2g19399 | C2H2g08597 | LOC_Os02g08440 | Os02g0181300 | WRKY71, OsWRKY71 | Detail |
| CX2g018962 | 2:3,989,333-3,990,444 | + | C1H2g31251 | C2H2g13400 | LOC_Os02g08470 | Os02g0181700 | - | Detail |
| CX2g021549 | 2:3,994,499-3,996,833 | + | C1H2g13602 | C2H2g22677 | LOC_Os02g08480 | Os02g0181800 | - | Detail |
| CX2g021572 | 2:3,998,233-4,003,170 | - | C1H2g14304 | C2H2g06559 | LOC_Os02g08490 | Os02g0181900 | - | Detail |
| CX2g020537 | 2:4,004,752-4,008,725 | - | C1H2g19533 | C2H2g18423 | LOC_Os02g08500 | Os02g0182100 | RR24, OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, DLC1 | Detail |
| CX2g023903 | 2:4,015,037-4,015,216 | - | - | - | - | - | - | Detail |
| CX2g019859 | 2:4,026,776-4,027,369 | - | C1H2g06188 | - | LOC_Os02g08510 | Os02g0182300 | - | Detail |