| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01900 | 3:24,775,920-24,778,940 | - | C2H3g20768 | CX3g030404 | LOC_Os03g46660 | Os03g0669300 | - | Detail |
| C1H3g19071 | 3:24,784,668-24,786,240 | + | C2H3g23453 | CX3g029156 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| C1H3g28800 | 3:24,789,046-24,790,599 | + | C2H3g11932 | CX3g027229 | LOC_Os03g46681 | Os03g0669600 | - | Detail |
| C1H3g21247 | 3:24,793,959-24,795,830 | - | C2H3g02411 | CX3g025010 | LOC_Os03g46690 | Os03g0669900 | - | Detail |
| C1H3g23850 | 3:24,796,112-24,801,862 | + | C2H3g12571 | CX3g026592 | LOC_Os03g46710 | Os03g0669800 | - | Detail |
| C1H3g12142 | 3:24,804,774-24,805,601 | - | C2H3g22513 | CX3g030274 | LOC_Os03g46720 | Os03g0669900 | - | Detail |
| C1H3g06816 | 3:24,807,809-24,812,058 | - | C2H3g10273 | CX3g027101 | LOC_Os03g46740 | Os03g0670100 | - | Detail |
| C1H3g09360 | 3:24,812,188-24,814,741 | + | C2H3g22557 | CX3g029731 | LOC_Os03g46750 | Os03g0670200 | - | Detail |
| C1H3g19284 | 3:24,821,749-24,822,829 | + | C2H3g25601 | CX3g026475 | LOC_Os03g46770 | Os03g0670700 | - | Detail |
| C1H3g25865 | 3:24,830,682-24,831,800 | + | C2H3g03723 | CX3g027784 | LOC_Os03g46790 | Os03g0671000 | - | Detail |
| C1H3g02739 | 3:24,858,955-24,863,514 | - | C2H3g18432 | CX3g027388 | LOC_Os03g46860 | Os03g0671800 | - | Detail |
| C1H3g03694 | 3:24,883,691-24,887,954 | - | C2H3g20149 | CX3g029841 | LOC_Os03g46910 | Os03g0672300 | OsPK8 | Detail |
| C1H3g13145 | 3:24,888,525-24,891,487 | - | C2H3g14853 | CX3g027713 | LOC_Os03g46920 | Os03g0672400 | - | Detail |
| C1H3g30917 | 3:24,900,206-24,900,936 | - | C2H3g26281 | CX3g025592 | LOC_Os03g46930 | Os03g0672500 | OsEPFL4 | Detail |
| C1H3g27862 | 3:24,904,548-24,913,504 | - | C2H3g15483 | CX3g025164 | LOC_Os03g46950 | Os03g0672700 | - | Detail |
| C1H3g17355 | 3:24,919,948-24,922,842 | + | C2H3g13483 | CX3g030146 | LOC_Os03g47010 | Os03g0672900 | OsXYN1, OsXyn1 | Detail |
| C1H3g13704 | 3:24,924,537-24,930,234 | - | C2H3g24723 | CX3g027200 | LOC_Os03g47016 | Os03g0673000 | - | Detail |
| C1H3g25759 | 3:24,953,373-24,960,215 | - | C2H3g09463 | CX3g026191 | LOC_Os03g47036 | Os03g0673500 | - | Detail |
| C1H3g00984 | 3:24,984,969-24,993,333 | - | C2H3g14597 | CX3g029508 | LOC_Os03g47070 | Os03g0673800 | - | Detail |
| C1H3g31854 | 3:25,015,842-25,021,446 | + | C2H3g00159 | CX3g029857 | LOC_Os03g47120 | Os03g0674300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022399 | 2:3,844,651-3,846,658 | - | C1H2g09345 | C2H2g12176 | LOC_Os02g08310 | Os02g0179400 | - | Detail |
| CX2g020585 | 2:3,853,439-3,857,402 | + | C1H2g30953 | C2H2g24288 | LOC_Os02g08320 | Os02g0179500 | - | Detail |
| CX2g020007 | 2:3,858,484-3,860,469 | - | C1H2g15298 | - | LOC_Os02g08330 | Os02g0179600 | - | Detail |
| CX2g020510 | 2:3,862,703-3,867,714 | - | C1H2g23751 | C2H2g01634 | LOC_Os02g08350 | Os02g0179800 | - | Detail |
| CX2g023636 | 2:3,869,823-3,878,213 | + | C1H2g17009 | C2H2g05800 | LOC_Os02g08360 | Os02g0179900 | - | Detail |
| CX2g023036 | 2:3,873,368-3,873,719 | - | - | - | - | Os02g0179950 | - | Detail |
| CX2g019636 | 2:3,881,555-3,884,206 | + | C1H2g04017 | C2H2g08895 | LOC_Os02g08364 | Os02g0180000 | - | Detail |
| CX2g022824 | 2:3,885,102-3,886,549 | - | C1H2g13865 | C2H2g28931 | LOC_Os02g08370 | Os02g0180100 | - | Detail |
| CX2g023398 | 2:3,889,333-3,892,535 | + | C1H2g02146 | C2H2g25419 | LOC_Os02g08380 | Os02g0180200 | LA2, LTA1 | Detail |
| CX2g022601 | 2:3,908,140-3,909,743 | + | C1H2g01164 | C2H2g28103 | LOC_Os02g08400 | Os02g0180400 | HHC2 | Detail |
| CX2g022893 | 2:3,913,167-3,915,472 | - | C1H2g08033 | C2H2g19969 | LOC_Os02g08410 | Os02g0180500 | - | Detail |
| CX2g022487 | 2:3,919,740-3,922,740 | + | C1H2g12941 | C2H2g21393 | LOC_Os02g08420 | Os02g0180700 | OsCCR21 | Detail |
| CX2g019488 | 2:3,954,898-3,955,137 | + | - | - | - | Os02g0180900 | - | Detail |
| CX2g020326 | 2:3,975,216-3,976,612 | + | C1H2g19399 | C2H2g08597 | LOC_Os02g08440 | Os02g0181300 | WRKY71, OsWRKY71 | Detail |
| CX2g018962 | 2:3,989,333-3,990,444 | + | C1H2g31251 | C2H2g13400 | LOC_Os02g08470 | Os02g0181700 | - | Detail |
| CX2g021549 | 2:3,994,499-3,996,833 | + | C1H2g13602 | C2H2g22677 | LOC_Os02g08480 | Os02g0181800 | - | Detail |
| CX2g021572 | 2:3,998,233-4,003,170 | - | C1H2g14304 | C2H2g06559 | LOC_Os02g08490 | Os02g0181900 | - | Detail |
| CX2g020537 | 2:4,004,752-4,008,725 | - | C1H2g19533 | C2H2g18423 | LOC_Os02g08500 | Os02g0182100 | RR24, OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, DLC1 | Detail |
| CX2g023903 | 2:4,015,037-4,015,216 | - | - | - | - | - | - | Detail |
| CX2g019859 | 2:4,026,776-4,027,369 | - | C1H2g06188 | - | LOC_Os02g08510 | Os02g0182300 | - | Detail |