| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g24923 | 1:13,798,897-13,806,357 | - | C2H1g04184 | CX1g006855 | LOC_Os01g27040 | Os01g0367900 | OsCHR728, CHR728, OsCHR11 | Detail |
| C1H1g25289 | 1:13,822,069-13,822,308 | + | C2H1g05311 | - | LOC_Os01g27070 | Os01g0368500 | - | Detail |
| C1H1g29900 | 1:13,822,688-13,824,024 | + | C2H1g05311 | CX1g000728 | LOC_Os01g27100 | Os01g0368500 | - | Detail |
| C1H1g21071 | 1:13,844,768-13,853,413 | - | C2H1g23898 | CX1g002302 | LOC_Os01g27150 | Os01g0369000 | - | Detail |
| C1H1g21722 | 1:13,861,346-13,866,738 | + | C2H1g08610 | CX1g007040 | LOC_Os01g27160 | Os01g0369200 | OsCUL1-3 | Detail |
| C1H1g09984 | 1:13,867,263-13,867,565 | - | C2H1g00961 | CX1g002985 | LOC_Os01g27170 | Os01g0369300 | OsHAK3 | Detail |
| C1H1g16578 | 1:13,867,587-13,871,948 | - | C2H1g00961 | CX1g002985 | LOC_Os01g27170 | Os01g0369300 | OsHAK3 | Detail |
| C1H1g21027 | 1:13,875,291-13,876,304 | + | C2H1g23105 | CX1g004644 | LOC_Os01g27190 | Os01g0369500 | - | Detail |
| C1H1g15878 | 1:13,876,388-13,877,154 | + | C2H1g15692 | - | - | - | - | Detail |
| C1H1g28118 | 1:13,880,041-13,880,500 | + | C2H1g16294 | CX1g005028 | - | - | - | Detail |
| C1H1g15388 | 1:13,884,773-13,886,360 | - | C2H1g16460 | CX1g002058 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| C1H1g02110 | 1:13,897,917-13,898,813 | + | C2H1g23105 | CX1g004644 | LOC_Os01g27190 | Os01g0369500 | - | Detail |
| C1H1g03904 | 1:13,904,189-13,905,750 | - | C2H1g16460 | CX1g005613 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| C1H1g06071 | 1:13,917,711-13,919,649 | - | C2H1g30124 | CX1g000151 | LOC_Os01g27230 | Os01g0370000 | - | Detail |
| C1H1g23256 | 1:13,920,819-13,921,385 | - | C2H1g30124 | CX1g005680 | LOC_Os01g27240 | Os01g0369900 | - | Detail |
| C1H1g03681 | 1:13,926,362-13,928,647 | - | C2H1g01507 | CX1g005680 | LOC_Os01g27240 | Os01g0370000 | - | Detail |
| C1H1g30782 | 1:13,947,447-13,948,595 | - | C2H1g22665 | CX1g001786 | LOC_Os01g27260 | Os01g0370200 | - | Detail |
| C1H1g22563 | 1:13,953,832-13,955,238 | + | C2H1g23519 | CX1g004528 | LOC_Os01g27300 | Os01g0370600 | - | Detail |
| C1H1g15771 | 1:13,968,971-13,970,431 | - | - | - | - | - | - | Detail |
| C1H1g11191 | 1:13,971,806-13,974,151 | - | C2H1g23519 | CX1g000438 | LOC_Os01g27360 | Os01g0371200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023253 | 2:3,251,509-3,252,305 | - | C1H2g05199 | C2H2g05298 | LOC_Os02g07240 | Os02g0168900 | - | Detail |
| CX2g023357 | 2:3,253,565-3,256,947 | - | C1H2g08763 | C2H2g28592 | LOC_Os02g07250 | Os02g0169000 | - | Detail |
| CX2g020247 | 2:3,260,255-3,263,494 | + | C1H2g16238 | C2H2g19444 | LOC_Os02g07260 | Os02g0169300 | - | Detail |
| CX2g023065 | 2:3,272,031-3,278,949 | - | C1H2g08697 | C2H2g02121 | LOC_Os02g07310 | Os02g0169400 | OsAGO17 | Detail |
| CX2g022768 | 2:3,282,297-3,282,446 | - | - | - | - | - | - | Detail |
| CX2g022837 | 2:3,300,895-3,311,551 | + | C1H2g04805 | C2H2g01264 | LOC_Os02g07340 | Os02g0169800 | - | Detail |
| CX2g022025 | 2:3,314,373-3,318,143 | - | C1H2g14236 | C2H2g22477 | LOC_Os02g07350 | Os02g0169900 | - | Detail |
| CX2g019659 | 2:3,319,288-3,322,317 | + | C1H2g12408 | C2H2g09938 | LOC_Os02g07360 | Os02g0170000 | - | Detail |
| CX2g020746 | 2:3,331,520-3,335,641 | - | C1H2g03281 | C2H2g25691 | LOC_Os02g07430 | Os02g0170300 | MADS29, OsMADS29 | Detail |
| CX2g023087 | 2:3,349,287-3,350,066 | - | C1H2g26637 | C2H2g02842 | LOC_Os02g07450 | Os02g0170500 | OsNF-YC1, HAP5A | Detail |
| CX2g023124 | 2:3,354,454-3,354,846 | - | C1H2g19135 | - | LOC_Os02g07460 | Os02g0170701 | - | Detail |
| CX2g024402 | 2:3,359,506-3,364,015 | - | C1H2g15503 | C2H2g20496 | LOC_Os02g07480 | - | - | Detail |
| CX2g020723 | 2:3,368,979-3,373,372 | + | C1H2g28251 | C2H2g09698 | LOC_Os02g07490 | Os02g0171100 | - | Detail |
| CX2g022161 | 2:3,375,960-3,377,016 | + | - | - | - | - | - | Detail |
| CX2g022156 | 2:3,377,874-3,381,868 | + | C1H2g07223 | C2H2g27151 | LOC_Os02g07495 | Os02g0171700 | - | Detail |
| CX2g018955 | 2:3,383,166-3,383,465 | + | C1H2g20806 | C2H2g01379 | LOC_Os02g07550 | Os02g0171500 | - | Detail |
| CX2g022835 | 2:3,385,266-3,385,666 | + | C1H2g30886 | C2H2g21009 | LOC_Os02g07575 | Os02g0171700 | - | Detail |
| CX2g023844 | 2:3,398,313-3,403,629 | - | C1H2g19030 | C2H2g02678 | LOC_Os02g07630 | Os02g0172600 | OsHMA6 | Detail |
| CX2g020417 | 2:3,408,645-3,409,294 | + | C1H2g14064 | C2H2g18811 | - | - | - | Detail |
| CX2g024668 | 2:3,411,315-3,411,467 | - | - | - | - | Os02g0121600 | - | Detail |