| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g19937 | 4:5,291,901-5,292,961 | + | C2H4g08911 | CX4g035259 | LOC_Os04g11970 | Os04g0196200 | OsASMT2 | Detail |
| C1H4g07183 | 4:5,314,463-5,317,161 | - | C2H4g17260 | CX4g034245 | LOC_Os04g12010 | Os04g0196600 | - | Detail |
| C1H4g18138 | 4:5,360,316-5,361,260 | + | C2H4g18642 | - | LOC_Os04g12060 | Os04g0197100 | - | Detail |
| C1H4g08988 | 4:5,365,722-5,370,854 | + | C2H4g00649 | CX4g035840 | LOC_Os04g12080 | Os04g0197200 | - | Detail |
| C1H4g25771 | 4:5,383,678-5,385,078 | - | C2H4g18722 | CX4g031765 | - | Os04g0197500 | - | Detail |
| C1H4g21757 | 4:5,393,908-5,398,869 | - | C2H4g14359 | CX1g000225 | - | Os04g0226400 | - | Detail |
| C1H4g22550 | 4:5,400,219-5,400,623 | + | - | - | - | - | - | Detail |
| C1H4g27102 | 4:5,441,945-5,450,377 | + | C2H4g15606 | CX4g035107 | LOC_Os04g12140 | Os04g0198733 | - | Detail |
| C1H4g06363 | 4:5,465,567-5,467,925 | - | - | - | - | - | - | Detail |
| C1H4g17776 | 4:5,469,221-5,470,399 | + | C2H4g26263 | CX4g032660 | - | Os04g0195100 | - | Detail |
| C1H4g14073 | 4:5,504,041-5,505,003 | + | C2H4g26263 | CX4g032660 | - | Os04g0195100 | - | Detail |
| C1H4g12642 | 4:5,563,624-5,567,254 | + | C2H4g11156 | CX4g034543 | - | Os09g0124200 | - | Detail |
| C1H4g15169 | 4:5,636,019-5,638,800 | - | C2H4g14785 | CX4g034359 | LOC_Os04g12390 | Os04g0200400 | - | Detail |
| C1H4g14978 | 4:5,644,403-5,645,228 | - | C2H4g14785 | CX4g034359 | LOC_Os04g12390 | Os04g0200400 | - | Detail |
| C1H4g16267 | 4:5,768,059-5,771,751 | - | C2H4g18135 | CX4g031446 | LOC_Os04g12460 | Os04g0201000 | - | Detail |
| C1H4g16105 | 4:5,789,191-5,795,814 | - | C2H4g10504 | CX4g034375 | LOC_Os04g12480 | Os04g0201200 | - | Detail |
| C1H4g17374 | 4:5,823,492-5,834,769 | - | C2H4g26946 | CX4g033852 | LOC_Os04g12530 | Os04g0201500 | OsAAT30 | Detail |
| C1H4g14971 | 4:5,847,100-5,850,704 | - | C2H4g03852 | CX4g034779 | LOC_Os04g12540 | Os04g0201900 | SDRLK-LecRK1, OsLecRK1, Bph3 | Detail |
| C1H4g07233 | 4:5,851,032-5,851,822 | + | - | - | - | - | - | Detail |
| C1H4g17048 | 4:5,863,850-5,866,285 | - | C2H4g12193 | CX4g034921 | LOC_Os04g12560 | Os04g0202300 | SDRLK-LecRK2, OsLecRK2, Bph3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022950 | 2:2,141,534-2,141,770 | + | - | - | - | - | - | Detail |
| CX2g023498 | 2:2,145,937-2,153,660 | - | C1H2g15055 | C2H2g05196 | LOC_Os02g04840 | Os02g0141300 | CAP1 | Detail |
| CX2g023784 | 2:2,155,655-2,156,941 | - | C1H2g16491 | C2H2g14235 | LOC_Os02g04850 | Os02g0141400 | - | Detail |
| CX2g022470 | 2:2,157,812-2,160,489 | - | C1H2g28071 | C2H2g14235 | LOC_Os02g04860 | Os02g0141500 | - | Detail |
| CX2g023805 | 2:2,162,389-2,162,538 | + | - | - | LOC_Os11g11330 | Os11g0220300 | - | Detail |
| CX2g022593 | 2:2,183,811-2,184,375 | + | C1H2g24356 | C2H2g06162 | LOC_Os02g04890 | - | - | Detail |
| CX2g019170 | 2:2,186,357-2,186,731 | - | - | - | - | - | - | Detail |
| CX2g022424 | 2:2,188,019-2,190,090 | - | C1H2g25199 | C2H2g14235 | LOC_Os02g04900 | Os02g0144800 | - | Detail |
| CX2g024344 | 2:2,190,266-2,190,517 | + | C1H2g09532 | - | - | Os02g0142060 | - | Detail |
| CX2g023696 | 2:2,196,954-2,199,560 | + | - | C2H1g19322 | LOC_Os02g08450 | Os04g0401400 | - | Detail |
| CX2g023926 | 2:2,208,183-2,223,489 | - | C1H2g07859 | C2H2g15830 | LOC_Os02g04950 | Os02g0147300 | - | Detail |
| CX2g024097 | 2:2,232,980-2,246,484 | + | C1H2g03029 | C2H2g13368 | LOC_Os02g04970 | Os02g0142500 | - | Detail |
| CX2g020437 | 2:2,248,216-2,251,568 | + | C1H2g10689 | C2H2g22103 | LOC_Os02g05030 | Os02g0143100 | - | Detail |
| CX2g022091 | 2:2,253,730-2,264,782 | + | C1H2g01626 | C2H2g08417 | LOC_Os02g05040 | Os02g0143200 | - | Detail |
| CX2g023204 | 2:2,266,981-2,267,358 | + | C1H2g17614 | C2H2g21001 | LOC_Os02g05050 | Os02g0143300 | - | Detail |
| CX2g021228 | 2:2,269,269-2,269,661 | - | C1H2g26716 | C2H2g21001 | LOC_Os02g05060 | Os02g0143400 | - | Detail |
| CX2g024203 | 2:2,276,793-2,277,867 | + | C1H2g25199 | C2H2g14235 | LOC_Os02g05120 | Os02g0144200 | - | Detail |
| CX2g020466 | 2:2,287,366-2,291,217 | + | C1H2g05324 | C2H2g15830 | LOC_Os02g05310 | Os02g0146400 | - | Detail |
| CX2g020302 | 2:2,292,756-2,297,037 | + | C1H2g12282 | C2H2g06566 | LOC_Os02g05320 | Os02g0146500 | - | Detail |
| CX2g020037 | 2:2,300,078-2,303,148 | + | C1H2g18676 | C2H2g08642 | LOC_Os02g05330 | Os02g0146600 | OseIF4A | Detail |