| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20366 | 3:3,630,664-3,635,758 | + | C2H3g08147 | CX3g028669 | LOC_Os03g08170 | Os03g0179400 | RLCK103, GUDK, OsRLCK103 | Detail |
| C1H3g12127 | 3:3,638,891-3,639,716 | - | C2H3g15441 | CX3g028526 | LOC_Os03g08200 | Os03g0179700 | - | Detail |
| C1H3g24405 | 3:3,643,365-3,649,766 | + | C2H3g12971 | CX3g028986 | LOC_Os03g08220 | Os03g0179900 | - | Detail |
| C1H3g02343 | 3:3,651,319-3,653,238 | - | C2H3g00189 | CX3g028266 | LOC_Os03g08230 | Os03g0180000 | - | Detail |
| C1H3g14063 | 3:3,657,034-3,657,459 | - | C2H3g00572 | CX3g030311 | LOC_Os03g08250 | Os03g0180100 | - | Detail |
| C1H3g29143 | 3:3,660,290-3,667,076 | + | C2H3g21163 | CX3g029641 | LOC_Os03g08270 | Os03g0180300 | - | Detail |
| C1H3g14724 | 3:3,667,388-3,669,811 | - | C2H3g26539 | CX3g028474 | LOC_Os03g08280 | Os03g0180400 | OsPAA1 | Detail |
| C1H3g22681 | 3:3,677,704-3,678,661 | + | C2H3g28919 | CX3g030332 | LOC_Os03g08290 | Os03g0180600 | - | Detail |
| C1H3g16812 | 3:3,678,840-3,684,000 | - | C2H3g14443 | - | - | - | - | Detail |
| C1H3g29454 | 3:3,688,899-3,689,435 | - | C2H3g02101 | CX3g028990 | LOC_Os03g08310 | Os03g0180800 | TIFY11A, OsJAZ3, OsJAZ 9, OsJAZ9, OsTIFY11a, JAZ9 | Detail |
| C1H3g20655 | 3:3,693,105-3,694,467 | + | C2H3g09847 | CX3g028324 | LOC_Os03g08320 | Os03g0180900 | OsJAZ11 | Detail |
| C1H3g10433 | 3:3,701,038-3,701,598 | + | C2H3g19227 | CX3g026192 | LOC_Os03g08330 | Os03g0181100 | - | Detail |
| C1H3g18608 | 3:3,711,839-3,715,546 | + | C2H3g22563 | CX3g025929 | LOC_Os03g08350 | Os03g0181400 | - | Detail |
| C1H3g16121 | 3:3,717,757-3,721,734 | + | C2H3g27023 | CX3g029590 | LOC_Os03g08360 | Os03g0181500 | ONI1, OsCUT4 | Detail |
| C1H3g01704 | 3:3,724,277-3,728,741 | + | C2H3g06913 | CX3g030922 | LOC_Os03g08370 | Os03g0181600 | - | Detail |
| C1H3g27694 | 3:3,730,211-3,735,825 | + | C2H3g27575 | CX3g030111 | LOC_Os03g08380 | Os03g0181750 | - | Detail |
| C1H3g16917 | 3:3,738,383-3,742,754 | + | C2H3g19710 | CX3g028124 | LOC_Os03g08390 | Os03g0181800 | - | Detail |
| C1H3g01314 | 3:3,753,645-3,756,678 | + | C2H3g29238 | CX3g030065 | LOC_Os03g08410 | Os03g0182000 | - | Detail |
| C1H3g08820 | 3:3,768,582-3,776,410 | + | C2H3g25409 | CX3g030112 | LOC_Os03g08430 | Os03g0182400 | - | Detail |
| C1H3g11862 | 3:3,777,072-3,779,226 | - | C2H3g18979 | CX3g027156 | LOC_Os03g08440 | Os03g0182600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003572 | 1:8,629,773-8,634,743 | - | C1H1g17187 | C2H1g21617 | LOC_Os01g16910 | Os01g0276200 | OsVDAC7 | Detail |
| CX1g005233 | 1:8,639,334-8,640,162 | + | C1H1g02811 | C2H1g10026 | LOC_Os01g16920 | Os01g0276300 | OsLEA1b | Detail |
| CX1g001016 | 1:8,642,688-8,644,124 | - | - | C2H1g04825 | LOC_Os01g16930 | Os01g0276400 | - | Detail |
| CX1g003930 | 1:8,644,902-8,648,614 | - | C1H1g24775 | C2H1g11604 | LOC_Os01g16940 | Os01g0276500 | - | Detail |
| CX1g004479 | 1:8,650,048-8,651,085 | + | C1H1g22295 | C2H1g06104 | LOC_Os01g16950 | Os01g0276600 | - | Detail |
| CX1g001281 | 1:8,653,655-8,658,869 | - | C1H1g24762 | C2H1g19690 | LOC_Os01g16960 | Os01g0276700 | - | Detail |
| CX1g002381 | 1:8,661,840-8,669,329 | - | C1H1g09923 | C2H1g18824 | LOC_Os01g16970 | Os01g0276800 | - | Detail |
| CX1g006477 | 1:8,700,110-8,703,702 | + | C1H1g21978 | C2H1g19986 | LOC_Os01g17000 | Os01g0277500 | OsDof4 | Detail |
| CX1g007267 | 1:8,704,643-8,710,744 | - | C1H1g27208 | C2H1g07072 | LOC_Os01g17010 | Os01g0277600 | - | Detail |
| CX1g002837 | 1:8,714,498-8,714,668 | - | - | - | - | - | - | Detail |
| CX1g005265 | 1:8,716,638-8,719,782 | + | C1H1g17418 | C2H1g19392 | LOC_Os01g17020 | Os01g0277700 | - | Detail |
| CX1g005153 | 1:8,723,851-8,732,251 | + | C1H1g04503 | C2H1g04598 | LOC_Os01g17040 | Os01g0277900 | - | Detail |
| CX1g006471 | 1:8,734,560-8,734,934 | + | C1H6g20429 | - | - | - | - | Detail |
| CX1g000586 | 1:8,740,974-8,741,687 | - | - | C2H1g29384 | LOC_Os01g17050 | Os01g0278000 | OsVQ1 | Detail |
| CX1g000790 | 1:8,765,248-8,790,471 | - | C1H1g30954 | C2H1g28131 | LOC_Os03g42050 | Os03g0616700 | - | Detail |
| CX1g000984 | 1:8,776,691-8,776,891 | + | - | - | - | - | - | Detail |
| CX1g000102 | 1:8,793,072-8,793,312 | + | - | - | - | - | - | Detail |
| CX1g004265 | 1:8,828,869-8,833,980 | + | C1H1g02087 | C2H1g16144 | LOC_Os01g17070 | Os01g0278600 | - | Detail |
| CX1g006647 | 1:8,837,670-8,845,252 | + | C1H1g02797 | C2H1g08246 | LOC_Os01g17130 | Os01g0186000 | WRKY10 | Detail |
| CX1g001055 | 1:8,846,499-8,846,696 | - | - | - | - | - | - | Detail |