| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g016381 | 12:22,887,523-22,887,885 | - | C1H12g09994 | C2H12g09988 | LOC_Os12g43810 | Os12g0634600 | - | Detail |
| CX12g016574 | 12:22,887,668-22,888,348 | + | - | C2H12g00746 | - | - | - | Detail |
| CX12g018449 | 12:22,891,334-22,891,792 | + | C1H12g20787 | C2H12g13239 | LOC_Os12g43820 | Os12g0634700 | - | Detail |
| CX12g017507 | 12:22,892,729-22,894,960 | - | C1H12g26620 | C2H12g04752 | LOC_Os12g43830 | Os12g0634800 | - | Detail |
| CX12g015685 | 12:22,895,983-22,901,035 | - | C1H12g23284 | C2H12g14043 | LOC_Os12g43840 | Os12g0634900 | - | Detail |
| CX12g017404 | 12:22,904,067-22,904,405 | - | C1H12g19572 | C2H12g10894 | - | Os12g0635400 | - | Detail |
| CX12g016578 | 12:22,907,668-22,908,000 | + | C1H12g16817 | C2H12g21094 | - | - | - | Detail |
| CX12g018765 | 12:22,910,663-22,912,245 | + | C1H12g22776 | C2H12g05582 | LOC_Os12g43880 | Os12g0635500 | - | Detail |
| CX12g016983 | 12:22,916,221-22,917,108 | - | C1H12g03451 | C2H12g16074 | LOC_Os12g43890 | Os12g0635700 | - | Detail |
| CX12g017866 | 12:22,922,245-22,924,084 | + | C1H12g16590 | C2H12g10893 | LOC_Os12g43930 | Os12g0636000 | - | Detail |
| CX12g018578 | 12:22,925,123-22,929,695 | + | C1H12g23273 | C2H12g05681 | LOC_Os12g43940 | Os12g0636100 | - | Detail |
| CX12g017078 | 12:22,930,563-22,932,934 | - | C1H12g13304 | C2H12g04482 | LOC_Os12g43950 | Os12g0636200 | - | Detail |
| CX12g017424 | 12:22,951,826-22,952,017 | + | - | - | - | - | - | Detail |
| CX12g018141 | 12:22,952,765-22,954,603 | - | C1H12g02175 | C2H12g23640 | LOC_Os12g43970 | Os12g0636400 | - | Detail |
| CX12g015203 | 12:22,960,437-22,960,997 | - | C1H12g12356 | C2H12g28156 | LOC_Os12g43990 | Os12g0636700 | - | Detail |
| CX12g017833 | 12:22,961,766-22,964,834 | - | C1H12g30928 | C2H12g09303 | LOC_Os12g44000 | Os12g0636800 | OsUBC26 | Detail |
| CX12g018393 | 12:22,967,647-22,969,038 | - | C1H12g27798 | C2H12g17932 | LOC_Os12g44010 | Os12g0637000 | - | Detail |
| CX12g015323 | 12:22,970,213-22,972,722 | - | C1H12g02765 | C2H12g21621 | LOC_Os12g44020 | Os12g0637100 | OsPAP10c | Detail |
| CX12g016693 | 12:22,974,963-22,978,161 | - | C1H12g24005 | C2H12g00203 | LOC_Os12g44030 | Os12g0637200 | - | Detail |
| CX12g018676 | 12:22,983,375-22,985,153 | + | C1H12g21460 | C2H12g16305 | LOC_Os12g44060 | Os12g0637700 | - | Detail |