| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g28900 | 6:5,697,135-5,698,193 | + | C1H6g15439 | CX6g044911 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| C2H6g05024 | 6:5,698,908-5,701,872 | - | C1H6g14481 | CX6g043477 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| C2H6g02329 | 6:5,710,871-5,716,601 | + | C1H6g30867 | CX6g043791 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| C2H6g13941 | 6:5,719,681-5,727,442 | + | C1H6g06761 | CX6g041469 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| C2H6g19443 | 6:5,728,867-5,730,473 | + | C1H6g31791 | CX6g045028 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| C2H6g15100 | 6:5,731,963-5,736,797 | + | C1H6g30269 | CX6g044435 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| C2H6g02967 | 6:5,741,601-5,746,594 | + | C1H6g02539 | CX6g041722 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| C2H6g18393 | 6:5,755,045-5,755,854 | + | C1H6g20958 | CX6g043899 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| C2H6g07579 | 6:5,756,527-5,758,080 | - | C1H6g22566 | CX6g042564 | LOC_Os06g12510 | Os06g0231100 | - | Detail |
| C2H6g25430 | 6:5,760,221-5,762,376 | + | C1H6g10940 | CX6g042953 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| C2H6g00549 | 6:5,762,707-5,764,524 | - | C1H6g22566 | CX6g044108 | LOC_Os06g03570 | Os06g0231400 | - | Detail |
| C2H6g20507 | 6:5,770,817-5,773,183 | - | C1H6g09372 | CX6g042127 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| C2H6g04942 | 6:5,776,967-5,780,407 | - | C1H6g21654 | CX6g045497 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| C2H6g06021 | 6:5,784,696-5,794,631 | - | C1H6g16903 | CX6g044039 | LOC_Os06g12590 | Os06g0232100 | - | Detail |
| C2H6g20456 | 6:5,804,890-5,810,664 | + | C1H6g16972 | CX6g043544 | LOC_Os06g12600 | Os06g0232200 | OsFRK3 | Detail |
| C2H6g11066 | 6:5,828,992-5,832,397 | + | C1H6g17211 | CX6g041379 | LOC_Os06g12610 | Os06g0232300 | OsPIN1a | Detail |
| C2H6g00896 | 6:5,829,312-5,830,534 | - | - | - | - | Os06g0232350 | - | Detail |
| C2H6g26342 | 6:5,837,559-5,838,065 | - | C1H6g01622 | CX6g043622 | LOC_Os06g12620 | Os06g0232400 | - | Detail |
| C2H6g04539 | 6:5,851,234-5,854,132 | - | C1H6g13976 | CX6g045802 | LOC_Os06g12630 | Os06g0232600 | - | Detail |
| C2H6g12736 | 6:5,855,278-5,858,915 | + | C1H6g19729 | - | LOC_Os06g12640 | Os06g0232700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g015365 | 12:18,622,705-18,627,873 | - | C1H12g13279 | C2H12g26461 | LOC_Os12g36620 | Os12g0552300 | PPS1 | Detail |
| CX12g016909 | 12:18,628,838-18,632,663 | - | C1H12g27529 | C2H12g05175 | LOC_Os12g36640 | Os12g0552500 | - | Detail |
| CX12g015364 | 12:18,661,884-18,663,498 | + | C1H12g15786 | C2H12g12611 | LOC_Os12g36660 | Os12g0552600 | TGW12a, qTGW12a | Detail |
| CX12g016435 | 12:18,673,636-18,677,431 | + | C1H12g29275 | C2H12g05930 | LOC_Os12g36670 | Os12g0552700 | - | Detail |
| CX12g015172 | 12:18,681,837-18,684,329 | + | C1H12g24562 | C2H12g03052 | LOC_Os12g36680 | Os12g0552800 | - | Detail |
| CX12g016948 | 12:18,686,028-18,686,231 | - | - | C2H12g05968 | - | - | - | Detail |
| CX12g018213 | 12:18,687,189-18,690,809 | - | C1H12g15410 | C2H12g02154 | LOC_Os12g36690 | Os12g0516300 | - | Detail |
| CX12g016931 | 12:18,693,366-18,693,599 | + | C1H12g01930 | C2H12g06633 | - | - | - | Detail |
| CX12g015515 | 12:18,706,131-18,707,944 | - | C1H12g04068 | C2H12g05761 | LOC_Os12g36750 | Os12g0516800 | - | Detail |
| CX12g017302 | 12:18,709,694-18,710,628 | + | C1H1g06454 | C2H1g24956 | - | - | - | Detail |
| CX12g016097 | 12:18,714,916-18,724,701 | - | C1H12g01446 | C2H12g14585 | LOC_Os12g36760 | Os12g0554400 | - | Detail |
| CX12g016599 | 12:18,726,200-18,730,665 | - | C1H12g23720 | C2H12g15590 | LOC_Os12g36770 | Os12g0554500 | - | Detail |
| CX12g017228 | 12:18,730,997-18,731,170 | + | - | - | - | Os02g0188201 | - | Detail |
| CX12g018046 | 12:18,753,697-18,756,939 | + | C1H12g01737 | C2H12g04076 | LOC_Os12g36810 | Os12g0554800 | - | Detail |
| CX12g016121 | 12:18,785,921-18,789,866 | - | C1H12g31071 | C2H12g14752 | LOC_Os12g36890 | Os12g0555600 | ND1, CSLD4, OsCSLD4, OsCD1, CD1, SPO1 | Detail |
| CX12g015599 | 12:18,798,679-18,803,662 | + | C1H12g15134 | C2H12g19509 | LOC_Os12g36900 | Os12g0556100 | - | Detail |
| CX12g018685 | 12:18,804,772-18,804,945 | + | - | - | - | - | - | Detail |
| CX12g016424 | 12:18,811,212-18,814,826 | + | C1H12g31407 | C2H12g19756 | LOC_Os12g36910 | Os12g0556200 | - | Detail |
| CX12g018147 | 12:18,818,430-18,821,949 | + | C1H12g03891 | C2H12g09262 | LOC_Os12g36920 | Os12g0556300 | - | Detail |
| CX12g015253 | 12:18,834,059-18,837,021 | + | C1H12g14972 | C2H12g12821 | LOC_Os12g36940 | Os12g0556500 | - | Detail |