| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g31060 | 4:9,981,427-9,988,469 | - | C2H4g17225 | CX4g031399 | LOC_Os04g21660 | Os04g0284600 | - | Detail |
| C1H4g08612 | 4:9,994,952-9,997,366 | - | C2H4g05089 | CX4g036320 | LOC_Os04g21710 | Os04g0284900 | - | Detail |
| C1H4g20758 | 4:10,003,717-10,006,045 | - | C2H4g20581 | - | - | - | - | Detail |
| C1H4g13734 | 4:10,010,659-10,011,154 | - | C2H4g20979 | CX4g036368 | - | - | - | Detail |
| C1H4g07976 | 4:10,085,788-10,087,495 | + | C2H4g21060 | CX4g033406 | LOC_Os04g21790 | Os04g0286300 | - | Detail |
| C1H4g11497 | 4:10,104,559-10,109,249 | + | C2H4g29131 | CX4g034311 | LOC_Os04g21790 | Os04g0286300 | - | Detail |
| C1H4g12762 | 4:10,117,168-10,118,090 | + | - | CX4g031808 | - | Os04g0286366 | - | Detail |
| C1H4g30101 | 4:10,125,468-10,128,266 | + | C2H4g08504 | CX4g035225 | LOC_Os04g21890 | Os04g0286900 | - | Detail |
| C1H4g26329 | 4:10,149,454-10,150,595 | + | C2H4g22174 | CX4g034268 | LOC_Os04g21950 | Os04g0287400 | WRKY51, OsWRKY51 | Detail |
| C1H4g05917 | 4:10,195,606-10,196,473 | - | C2H4g16248 | CX4g033258 | LOC_Os04g22080 | Os04g0288100 | - | Detail |
| C1H4g15397 | 4:10,376,448-10,380,092 | - | C2H4g26122 | CX4g034987 | - | Os04g0295500 | - | Detail |
| C1H4g06691 | 4:10,404,858-10,405,596 | + | - | - | - | - | - | Detail |
| C1H4g19803 | 4:10,407,432-10,409,019 | + | C2H4g30305 | CX4g033464 | - | Os04g0615900 | - | Detail |
| C1H4g01835 | 4:10,431,424-10,432,366 | - | C2H7g18198 | - | - | - | - | Detail |
| C1H4g02573 | 4:10,436,420-10,436,816 | - | C2H7g24974 | CX7g048152 | - | - | - | Detail |
| C1H4g27160 | 4:10,438,101-10,439,303 | - | C2H4g23043 | CX4g032513 | LOC_Os04g22120 | Os04g0288500 | - | Detail |
| C1H4g28277 | 4:10,442,054-10,443,538 | - | C2H4g29101 | CX4g032513 | LOC_Os04g22120 | Os04g0288500 | - | Detail |
| C1H4g23795 | 4:10,485,650-10,490,541 | + | C2H4g20140 | CX4g034060 | LOC_Os04g22240 | Os04g0289800 | - | Detail |
| C1H4g25540 | 4:10,536,375-10,542,259 | + | C2H4g28831 | CX4g032411 | LOC_Os04g22360 | Os04g0290800 | OsRUS1 | Detail |
| C1H4g12809 | 4:10,552,015-10,558,725 | + | C2H4g30508 | CX4g035342 | LOC_Os04g22380 | Os04g0291100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g015365 | 12:18,622,705-18,627,873 | - | C1H12g13279 | C2H12g26461 | LOC_Os12g36620 | Os12g0552300 | PPS1 | Detail |
| CX12g016909 | 12:18,628,838-18,632,663 | - | C1H12g27529 | C2H12g05175 | LOC_Os12g36640 | Os12g0552500 | - | Detail |
| CX12g015364 | 12:18,661,884-18,663,498 | + | C1H12g15786 | C2H12g12611 | LOC_Os12g36660 | Os12g0552600 | TGW12a, qTGW12a | Detail |
| CX12g016435 | 12:18,673,636-18,677,431 | + | C1H12g29275 | C2H12g05930 | LOC_Os12g36670 | Os12g0552700 | - | Detail |
| CX12g015172 | 12:18,681,837-18,684,329 | + | C1H12g24562 | C2H12g03052 | LOC_Os12g36680 | Os12g0552800 | - | Detail |
| CX12g016948 | 12:18,686,028-18,686,231 | - | - | C2H12g05968 | - | - | - | Detail |
| CX12g018213 | 12:18,687,189-18,690,809 | - | C1H12g15410 | C2H12g02154 | LOC_Os12g36690 | Os12g0516300 | - | Detail |
| CX12g016931 | 12:18,693,366-18,693,599 | + | C1H12g01930 | C2H12g06633 | - | - | - | Detail |
| CX12g015515 | 12:18,706,131-18,707,944 | - | C1H12g04068 | C2H12g05761 | LOC_Os12g36750 | Os12g0516800 | - | Detail |
| CX12g017302 | 12:18,709,694-18,710,628 | + | C1H1g06454 | C2H1g24956 | - | - | - | Detail |
| CX12g016097 | 12:18,714,916-18,724,701 | - | C1H12g01446 | C2H12g14585 | LOC_Os12g36760 | Os12g0554400 | - | Detail |
| CX12g016599 | 12:18,726,200-18,730,665 | - | C1H12g23720 | C2H12g15590 | LOC_Os12g36770 | Os12g0554500 | - | Detail |
| CX12g017228 | 12:18,730,997-18,731,170 | + | - | - | - | Os02g0188201 | - | Detail |
| CX12g018046 | 12:18,753,697-18,756,939 | + | C1H12g01737 | C2H12g04076 | LOC_Os12g36810 | Os12g0554800 | - | Detail |
| CX12g016121 | 12:18,785,921-18,789,866 | - | C1H12g31071 | C2H12g14752 | LOC_Os12g36890 | Os12g0555600 | ND1, CSLD4, OsCSLD4, OsCD1, CD1, SPO1 | Detail |
| CX12g015599 | 12:18,798,679-18,803,662 | + | C1H12g15134 | C2H12g19509 | LOC_Os12g36900 | Os12g0556100 | - | Detail |
| CX12g018685 | 12:18,804,772-18,804,945 | + | - | - | - | - | - | Detail |
| CX12g016424 | 12:18,811,212-18,814,826 | + | C1H12g31407 | C2H12g19756 | LOC_Os12g36910 | Os12g0556200 | - | Detail |
| CX12g018147 | 12:18,818,430-18,821,949 | + | C1H12g03891 | C2H12g09262 | LOC_Os12g36920 | Os12g0556300 | - | Detail |
| CX12g015253 | 12:18,834,059-18,837,021 | + | C1H12g14972 | C2H12g12821 | LOC_Os12g36940 | Os12g0556500 | - | Detail |