| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g25799 | 3:21,855,969-21,861,944 | + | C1H3g24168 | CX3g026756 | LOC_Os03g42420 | Os03g0622100 | - | Detail |
| C2H3g07291 | 3:21,862,570-21,866,098 | - | C1H3g21229 | CX3g029697 | LOC_Os03g42480 | Os03g0622600 | - | Detail |
| C2H3g28170 | 3:21,880,963-21,881,323 | - | C1H3g08904 | CX3g029697 | LOC_Os03g42480 | Os03g0622600 | - | Detail |
| C2H3g03196 | 3:21,896,109-21,896,826 | + | C1H3g29338 | CX3g025485 | LOC_Os03g42520 | Os03g0623100 | - | Detail |
| C2H3g21699 | 3:21,932,897-21,942,713 | + | C1H3g27916 | CX3g030736 | LOC_Os03g42569 | Os03g0624000 | - | Detail |
| C2H3g15190 | 3:21,959,291-21,959,602 | + | - | CX3g028656 | LOC_Os03g42600 | Os03g0624300 | - | Detail |
| C2H3g25313 | 3:21,968,142-21,970,082 | + | C1H3g08494 | CX3g028370 | LOC_Os03g42630 | Os03g0624600 | - | Detail |
| C2H3g09083 | 3:21,973,891-21,979,239 | + | C1H3g16137 | CX3g027964 | LOC_Os03g42650 | Os03g0624800 | - | Detail |
| C2H3g11289 | 3:22,011,108-22,011,404 | - | - | - | - | - | - | Detail |
| C2H3g06917 | 3:22,025,621-22,036,771 | - | C1H3g14712 | CX3g025039 | LOC_Os03g42750 | Os03g0625700 | OsSEC3A | Detail |
| C2H3g21105 | 3:22,045,111-22,046,022 | - | - | - | - | - | - | Detail |
| C2H3g29064 | 3:22,048,009-22,051,280 | + | C1H3g07578 | CX3g029759 | LOC_Os03g42760 | Os03g0625800 | - | Detail |
| C2H3g01975 | 3:22,053,330-22,059,876 | - | C1H3g16517 | CX3g027078 | LOC_Os03g42770 | Os03g0625900 | - | Detail |
| C2H3g08723 | 3:22,068,602-22,070,031 | + | C1H3g21514 | CX3g029343 | LOC_Os03g42780 | Os03g0625933 | - | Detail |
| C2H3g20687 | 3:22,070,460-22,071,179 | + | C1H3g29387 | CX3g029343 | LOC_Os03g42780 | Os03g0626000 | - | Detail |
| C2H3g23218 | 3:22,073,567-22,075,960 | + | C1H3g27155 | CX3g030994 | LOC_Os03g42790 | Os03g0626100 | qGL3.5 | Detail |
| C2H3g18760 | 3:22,076,074-22,076,748 | + | C1H3g27155 | CX3g030994 | LOC_Os03g42790 | Os03g0626100 | qGL3.5 | Detail |
| C2H3g15721 | 3:22,089,314-22,091,201 | + | C1H3g08632 | CX3g030519 | LOC_Os03g42810 | Os03g0626500 | - | Detail |
| C2H3g07993 | 3:22,094,511-22,101,033 | + | C1H3g10295 | CX3g028719 | LOC_Os03g42820 | Os03g0626600 | - | Detail |
| C2H3g25529 | 3:22,109,745-22,112,331 | - | C1H3g04843 | CX3g025570 | LOC_Os03g42830 | Os03g0626700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g016197 | 12:16,787,781-16,788,530 | + | - | - | - | - | - | Detail |
| CX12g018498 | 12:16,789,791-16,790,102 | - | - | - | - | - | - | Detail |
| CX12g016030 | 12:16,795,119-16,795,454 | - | - | - | - | - | - | Detail |
| CX12g016291 | 12:16,796,375-16,797,782 | + | - | C2H12g22089 | LOC_Os12g32520 | Os12g0509600 | - | Detail |
| CX12g017766 | 12:16,807,681-16,808,210 | + | C1H2g04979 | C2H7g12708 | - | - | - | Detail |
| CX12g018462 | 12:16,811,028-16,811,438 | - | - | - | - | - | - | Detail |
| CX12g017016 | 12:16,824,327-16,825,388 | - | - | - | LOC_Os10g21192 | Os04g0473150 | - | Detail |
| CX12g016850 | 12:16,843,672-16,850,102 | + | C1H12g03703 | C2H12g26520 | LOC_Os12g32590 | Os12g0510500 | - | Detail |
| CX12g017324 | 12:16,855,496-16,857,545 | - | C1H12g21922 | C2H12g14514 | LOC_Os12g32610 | Os12g0510750 | OsSMP2 | Detail |
| CX12g017976 | 12:16,856,964-16,857,597 | + | C1H12g15070 | C2H12g19800 | - | Os12g0577700 | - | Detail |
| CX12g017638 | 12:16,862,850-16,864,470 | + | C1H12g07006 | C2H12g23023 | LOC_Os12g32620 | Os12g0510900 | - | Detail |
| CX12g017432 | 12:16,865,435-16,865,710 | + | - | - | - | Os02g0188201 | - | Detail |
| CX12g016065 | 12:16,867,531-16,870,191 | - | C1H12g03851 | C2H12g01778 | LOC_Os12g32630 | Os12g0511000 | - | Detail |
| CX12g017408 | 12:16,875,920-16,879,042 | + | C1H12g10988 | C2H12g29019 | LOC_Os12g32640 | Os12g0511200 | - | Detail |
| CX12g016554 | 12:16,882,286-16,885,181 | + | C1H12g02725 | C2H12g27722 | LOC_Os12g32650 | Os12g0511300 | - | Detail |
| CX12g015393 | 12:16,888,307-16,892,221 | - | C1H12g25225 | C2H12g10634 | LOC_Os12g32660 | Os12g0511400 | - | Detail |
| CX12g015792 | 12:16,918,329-16,925,907 | + | C1H12g02230 | C2H12g11130 | LOC_Os12g32750 | Os12g0512000 | YUCCA5, OsYUCCA5, OsYUC5, YUC5 | Detail |
| CX12g018646 | 12:16,928,036-16,931,024 | - | C1H12g03710 | C2H12g25999 | LOC_Os12g32760 | Os12g0512100 | OsPLT14 | Detail |
| CX12g018223 | 12:16,941,565-16,953,348 | - | C1H12g17769 | C2H12g03027 | LOC_Os12g32820 | Os12g0512700 | OsABCG50, OsPDR23, OsABCG50/PDR23 | Detail |
| CX12g018790 | 12:16,960,939-16,963,389 | - | C1H12g27986 | C2H12g05645 | LOC_Os12g32850 | Os12g0512800 | - | Detail |