| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30626 | 3:2,126,677-2,131,266 | - | C2H3g17004 | CX3g028566 | LOC_Os03g04940 | Os03g0143000 | - | Detail |
| C1H3g27298 | 3:2,133,189-2,135,540 | + | C2H3g18870 | CX3g025128 | LOC_Os03g04950 | Os03g0143100 | OsSDD1 | Detail |
| C1H3g02218 | 3:2,142,406-2,146,223 | - | C2H3g00510 | CX3g027250 | LOC_Os03g04960 | Os03g0143300 | - | Detail |
| C1H3g27270 | 3:2,146,929-2,152,087 | - | C2H3g20943 | CX3g029237 | LOC_Os03g04970 | Os03g0143400 | - | Detail |
| C1H3g30154 | 3:2,154,021-2,157,114 | + | C2H3g27834 | CX3g027862 | LOC_Os03g04980 | Os03g0143600 | - | Detail |
| C1H3g31666 | 3:2,159,495-2,163,767 | + | C2H3g13054 | CX3g030942 | LOC_Os03g04990 | Os03g0143700 | - | Detail |
| C1H3g05683 | 3:2,167,324-2,184,216 | + | C2H3g11174 | CX3g030855 | LOC_Os03g05020 | Os03g0143800 | LPL2 | Detail |
| C1H3g03140 | 3:2,184,465-2,185,292 | + | C2H3g25262 | CX3g030717 | LOC_Os03g05030 | Os03g0143900 | - | Detail |
| C1H3g19361 | 3:2,185,482-2,190,326 | - | C2H3g25681 | CX3g027941 | LOC_Os03g05040 | Os03g0144000 | MEICA1 | Detail |
| C1H3g21183 | 3:2,195,368-2,196,882 | + | C2H3g04857 | CX3g030916 | LOC_Os03g05060 | Os03g0144300 | - | Detail |
| C1H3g20447 | 3:2,199,850-2,201,403 | + | C2H3g23961 | CX3g030916 | LOC_Os03g05070 | Os03g0144500 | - | Detail |
| C1H3g09392 | 3:2,206,402-2,207,713 | - | - | CX3g029076 | - | - | - | Detail |
| C1H3g06705 | 3:2,211,729-2,213,543 | + | C2H3g00158 | CX3g030916 | LOC_Os03g05110 | Os03g0144800 | - | Detail |
| C1H3g19955 | 3:2,217,739-2,220,831 | - | C2H3g20075 | CX3g027788 | LOC_Os03g05140 | Os03g0145102 | - | Detail |
| C1H3g20499 | 3:2,229,168-2,229,920 | + | C2H3g29665 | CX3g025772 | LOC_Os03g05160 | Os03g0145200 | - | Detail |
| C1H3g25509 | 3:2,232,644-2,233,273 | + | C2H3g24545 | CX3g030193 | LOC_Os03g16890 | Os03g0692000 | - | Detail |
| C1H3g14347 | 3:2,236,168-2,238,339 | - | C2H3g14474 | CX3g027358 | - | Os03g0363100 | - | Detail |
| C1H3g07337 | 3:2,239,775-2,248,645 | - | C2H3g21503 | CX3g028191 | LOC_Os03g05200 | Os03g0145500 | - | Detail |
| C1H3g27104 | 3:2,251,853-2,253,121 | - | C2H3g25507 | CX3g025781 | LOC_Os03g05210 | Os03g0145600 | - | Detail |
| C1H3g18616 | 3:2,253,915-2,256,229 | - | C2H3g25373 | CX3g029694 | LOC_Os03g05260 | Os03g0145800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002839 | 1:7,965,003-7,968,083 | + | C1H10g06964 | C2H1g07347 | LOC_Os01g15860 | Os01g0263600 | - | Detail |
| CX1g006868 | 1:7,988,614-7,991,522 | - | C1H1g18015 | C2H1g18028 | LOC_Os01g15900 | Os01g0264000 | RDD1, OsDof, OsDof2, Dof2, OsDof-2 | Detail |
| CX1g002913 | 1:7,994,733-7,994,882 | - | - | - | - | - | - | Detail |
| CX1g003610 | 1:8,020,520-8,021,287 | + | C1H1g15752 | C2H1g18875 | LOC_Os01g15970 | Os01g0264400 | - | Detail |
| CX1g005560 | 1:8,023,122-8,025,944 | + | C1H1g22583 | C2H1g29970 | LOC_Os01g15979 | Os01g0264500 | - | Detail |
| CX1g004846 | 1:8,028,267-8,029,871 | + | C1H1g22583 | C2H1g16351 | LOC_Os01g15990 | Os01g0264600 | - | Detail |
| CX1g003410 | 1:8,035,611-8,038,000 | - | C1H1g00764 | C2H1g04930 | LOC_Os01g16000 | Os01g0264700 | OsSec14-1 | Detail |
| CX1g006955 | 1:8,045,658-8,048,888 | + | C1H1g30463 | C2H1g18047 | LOC_Os01g16010 | Os01g0264900 | - | Detail |
| CX1g002598 | 1:8,051,182-8,052,549 | + | - | C2H1g05764 | LOC_Os01g16020 | Os01g0265000 | OsGGR2, LYL2, OsGGRII | Detail |
| CX1g006039 | 1:8,053,095-8,055,662 | - | C1H1g31421 | C2H1g10976 | LOC_Os01g16030 | Os01g0265100 | - | Detail |
| CX1g005747 | 1:8,058,574-8,061,692 | - | C1H1g11286 | C2H1g02114 | LOC_Os01g16040 | Os01g0265200 | OsPAPST1 | Detail |
| CX1g007112 | 1:8,070,569-8,070,853 | - | - | C2H1g11487 | - | - | - | Detail |
| CX1g002223 | 1:8,071,090-8,072,410 | - | - | C2H1g21228 | - | Os01g0265400 | - | Detail |
| CX1g003650 | 1:8,073,377-8,073,703 | - | C1H1g29094 | - | - | - | - | Detail |
| CX1g004697 | 1:8,084,310-8,086,992 | - | C1H1g21127 | C2H1g27693 | LOC_Os01g16080 | Os01g0265700 | - | Detail |
| CX1g004489 | 1:8,087,375-8,087,590 | + | - | - | - | - | - | Detail |
| CX1g000499 | 1:8,091,264-8,092,739 | - | - | C2H1g00739 | LOC_Os01g16090 | Os01g0265800 | - | Detail |
| CX1g001659 | 1:8,094,340-8,097,863 | - | C1H1g27759 | C2H1g10672 | LOC_Os01g16100 | Os01g0265900 | - | Detail |
| CX1g000998 | 1:8,109,159-8,117,754 | + | C1H1g07258 | C2H1g01396 | LOC_Os01g16110 | Os01g0266000 | - | Detail |
| CX1g004062 | 1:8,125,683-8,126,279 | + | C1H1g24050 | C2H1g23893 | LOC_Os01g16120 | Os01g0266100 | - | Detail |