| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g25839 | 9:12,157,954-12,162,102 | + | C2H9g16912 | CX9g057257 | LOC_Os09g24710 | Os09g0413700 | - | Detail |
| C1H9g16168 | 9:12,184,054-12,185,196 | + | C2H9g05872 | CX9g055576 | LOC_Os09g24800 | Os09g0414300 | Os2R_MYB83 | Detail |
| C1H9g06201 | 9:12,203,735-12,204,076 | + | C2H8g26659 | CX8g052157 | LOC_Os09g24810 | Os09g0414500 | - | Detail |
| C1H9g27631 | 9:12,223,808-12,224,836 | - | C2H8g17645 | CX8g052157 | LOC_Os09g24820 | Os09g0466400 | OsZHD1 | Detail |
| C1H9g29440 | 9:12,241,409-12,242,580 | + | C2H9g10070 | CX9g057784 | LOC_Os09g24840 | Os09g0414900 | - | Detail |
| C1H9g27618 | 9:12,242,585-12,243,722 | - | C2H9g21296 | - | - | - | - | Detail |
| C1H9g17454 | 9:12,246,021-12,246,348 | - | C2H9g02971 | - | - | - | - | Detail |
| C1H9g06238 | 9:12,265,338-12,269,031 | + | C2H9g25855 | CX9g056267 | LOC_Os09g24900 | Os09g0415700 | - | Detail |
| C1H9g17729 | 9:12,269,022-12,276,246 | - | C2H9g19203 | CX9g055233 | LOC_Os09g24910 | Os09g0415800 | - | Detail |
| C1H9g31111 | 9:12,288,545-12,294,130 | + | C2H9g23439 | CX9g054854 | LOC_Os09g24924 | Os09g0416200 | OsSTP26 | Detail |
| C1H9g25465 | 9:12,297,086-12,302,691 | + | C2H9g14042 | CX9g057507 | LOC_Os09g24954 | Os09g0416500 | - | Detail |
| C1H9g23281 | 9:12,323,829-12,325,139 | + | C2H8g27178 | CX9g055245 | LOC_Os09g24970 | Os09g0416600 | - | Detail |
| C1H9g22850 | 9:12,328,776-12,332,188 | - | C2H9g28029 | CX9g057871 | LOC_Os09g24980 | Os09g0416700 | - | Detail |
| C1H9g27565 | 9:12,336,091-12,336,933 | + | C2H8g01898 | CX9g055408 | LOC_Os09g24990 | Os09g0416800 | OsCAF1G, OsCAF1-13 | Detail |
| C1H9g16627 | 9:12,346,458-12,348,003 | + | C2H9g01617 | CX9g057704 | LOC_Os09g25000 | Os09g0416900 | - | Detail |
| C1H9g10214 | 9:12,368,199-12,371,277 | - | C2H9g07186 | CX9g055541 | LOC_Os09g25040 | Os09g0417400 | - | Detail |
| C1H9g29068 | 9:12,379,351-12,381,198 | + | C2H9g01199 | CX9g055796 | LOC_Os09g25050 | Os09g0417500 | - | Detail |
| C1H9g04471 | 9:12,384,398-12,385,488 | - | C2H9g17545 | CX9g055243 | LOC_Os09g25060 | Os09g0417600 | WRKY76, OsWRKY76.3 | Detail |
| C1H9g20232 | 9:12,400,363-12,402,032 | - | C2H9g29801 | CX9g055795 | LOC_Os09g25070 | Os09g0417800 | WRKY62, OsWRKY62.2 | Detail |
| C1H9g05108 | 9:12,413,004-12,414,383 | - | C2H9g21780 | CX9g058068 | LOC_Os09g25090 | Os09g0418000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002839 | 1:7,965,003-7,968,083 | + | C1H10g06964 | C2H1g07347 | LOC_Os01g15860 | Os01g0263600 | - | Detail |
| CX1g006868 | 1:7,988,614-7,991,522 | - | C1H1g18015 | C2H1g18028 | LOC_Os01g15900 | Os01g0264000 | RDD1, OsDof, OsDof2, Dof2, OsDof-2 | Detail |
| CX1g002913 | 1:7,994,733-7,994,882 | - | - | - | - | - | - | Detail |
| CX1g003610 | 1:8,020,520-8,021,287 | + | C1H1g15752 | C2H1g18875 | LOC_Os01g15970 | Os01g0264400 | - | Detail |
| CX1g005560 | 1:8,023,122-8,025,944 | + | C1H1g22583 | C2H1g29970 | LOC_Os01g15979 | Os01g0264500 | - | Detail |
| CX1g004846 | 1:8,028,267-8,029,871 | + | C1H1g22583 | C2H1g16351 | LOC_Os01g15990 | Os01g0264600 | - | Detail |
| CX1g003410 | 1:8,035,611-8,038,000 | - | C1H1g00764 | C2H1g04930 | LOC_Os01g16000 | Os01g0264700 | OsSec14-1 | Detail |
| CX1g006955 | 1:8,045,658-8,048,888 | + | C1H1g30463 | C2H1g18047 | LOC_Os01g16010 | Os01g0264900 | - | Detail |
| CX1g002598 | 1:8,051,182-8,052,549 | + | - | C2H1g05764 | LOC_Os01g16020 | Os01g0265000 | OsGGR2, LYL2, OsGGRII | Detail |
| CX1g006039 | 1:8,053,095-8,055,662 | - | C1H1g31421 | C2H1g10976 | LOC_Os01g16030 | Os01g0265100 | - | Detail |
| CX1g005747 | 1:8,058,574-8,061,692 | - | C1H1g11286 | C2H1g02114 | LOC_Os01g16040 | Os01g0265200 | OsPAPST1 | Detail |
| CX1g007112 | 1:8,070,569-8,070,853 | - | - | C2H1g11487 | - | - | - | Detail |
| CX1g002223 | 1:8,071,090-8,072,410 | - | - | C2H1g21228 | - | Os01g0265400 | - | Detail |
| CX1g003650 | 1:8,073,377-8,073,703 | - | C1H1g29094 | - | - | - | - | Detail |
| CX1g004697 | 1:8,084,310-8,086,992 | - | C1H1g21127 | C2H1g27693 | LOC_Os01g16080 | Os01g0265700 | - | Detail |
| CX1g004489 | 1:8,087,375-8,087,590 | + | - | - | - | - | - | Detail |
| CX1g000499 | 1:8,091,264-8,092,739 | - | - | C2H1g00739 | LOC_Os01g16090 | Os01g0265800 | - | Detail |
| CX1g001659 | 1:8,094,340-8,097,863 | - | C1H1g27759 | C2H1g10672 | LOC_Os01g16100 | Os01g0265900 | - | Detail |
| CX1g000998 | 1:8,109,159-8,117,754 | + | C1H1g07258 | C2H1g01396 | LOC_Os01g16110 | Os01g0266000 | - | Detail |
| CX1g004062 | 1:8,125,683-8,126,279 | + | C1H1g24050 | C2H1g23893 | LOC_Os01g16120 | Os01g0266100 | - | Detail |