| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21651 | 3:29,491,122-29,491,529 | + | C2H3g23566 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C1H3g30412 | 3:29,493,098-29,497,408 | - | C2H3g21236 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C1H3g31602 | 3:29,507,666-29,511,887 | + | C2H3g28904 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C1H3g12054 | 3:29,515,446-29,519,574 | + | C2H3g20218 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C1H3g10528 | 3:29,542,717-29,545,299 | + | C2H3g15832 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C1H3g07992 | 3:29,558,212-29,565,388 | - | C2H3g26472 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C1H3g05042 | 3:29,563,740-29,565,161 | + | - | CX3g031219 | - | Os03g0764250 | - | Detail |
| C1H3g08783 | 3:29,571,598-29,578,524 | + | C2H3g25717 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C1H3g17565 | 3:29,587,778-29,589,926 | + | C2H3g13812 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C1H3g10682 | 3:29,595,065-29,600,114 | + | C2H3g16680 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C1H3g29826 | 3:29,617,138-29,619,779 | + | C2H3g01981 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C1H3g07713 | 3:29,621,338-29,624,205 | + | C2H3g10671 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| C1H3g24709 | 3:29,624,611-29,627,445 | - | C2H3g01497 | CX3g025964 | LOC_Os03g55640 | Os03g0765200 | - | Detail |
| C1H3g19260 | 3:29,634,253-29,637,768 | - | C2H3g05267 | CX3g030762 | LOC_Os03g55660 | Os03g0765400 | - | Detail |
| C1H3g01103 | 3:29,638,504-29,638,797 | - | C2H3g21899 | CX3g030135 | LOC_Os03g55670 | Os03g0765500 | - | Detail |
| C1H3g21398 | 3:29,638,851-29,640,204 | - | C2H3g10178 | CX3g030135 | LOC_Os03g55670 | - | - | Detail |
| C1H3g25450 | 3:29,641,672-29,642,685 | - | C2H3g20680 | CX3g030205 | LOC_Os03g55680 | Os03g0765500 | - | Detail |
| C1H3g27991 | 3:29,661,338-29,664,957 | - | C2H3g07544 | CX3g026492 | LOC_Os03g55730 | Os03g0766000 | - | Detail |
| C1H3g09378 | 3:29,666,999-29,667,235 | - | - | - | - | - | - | Detail |
| C1H3g10434 | 3:29,667,596-29,667,880 | - | C2H3g07544 | CX3g026492 | LOC_Os03g55734 | Os03g0766200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g017783 | 12:13,762,194-13,763,534 | + | C1H2g04140 | C2H12g22700 | - | - | - | Detail |
| CX12g015053 | 12:13,786,746-13,786,934 | + | - | - | - | - | - | Detail |
| CX12g015140 | 12:13,809,091-13,809,483 | + | C1H12g26749 | C2H12g27495 | - | Os12g0614600 | OsPID | Detail |
| CX12g018218 | 12:13,851,259-13,852,891 | + | C1H12g22387 | C2H12g01698 | LOC_Os12g26880 | Os12g0454600 | - | Detail |
| CX12g017787 | 12:13,887,092-13,890,319 | - | C1H12g13346 | C2H12g26986 | LOC_Os12g26940 | Os12g0454800 | CRL4, CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP | Detail |
| CX12g017242 | 12:13,890,528-13,890,704 | + | - | - | - | Os12g0568166 | - | Detail |
| CX12g016039 | 12:13,895,114-13,895,392 | + | C1H12g10028 | C2H12g26277 | - | - | - | Detail |
| CX12g015279 | 12:13,901,192-13,901,479 | + | - | C2H12g14469 | - | - | - | Detail |
| CX12g015970 | 12:13,901,511-13,901,831 | - | - | - | - | - | - | Detail |
| CX12g017142 | 12:13,939,030-13,939,404 | - | C1H12g16677 | - | LOC_Os12g27050 | Os12g0456000 | - | Detail |
| CX12g017975 | 12:13,941,580-13,944,930 | + | C1H12g23121 | C2H12g20253 | LOC_Os12g27060 | Os12g0456100 | - | Detail |
| CX12g016746 | 12:13,951,300-13,953,715 | - | C1H12g22119 | C2H12g20046 | LOC_Os12g27070 | Os12g0456200 | - | Detail |
| CX12g016323 | 12:13,958,382-13,958,810 | - | C1H12g10862 | C2H12g09925 | LOC_Os12g27080 | Os12g0456300 | - | Detail |
| CX12g016453 | 12:13,959,243-13,967,425 | + | C1H12g04965 | C2H12g00613 | LOC_Os12g27090 | Os12g0456400 | - | Detail |
| CX12g016959 | 12:13,977,333-13,978,170 | + | C1H12g25831 | C2H12g10115 | LOC_Os12g27190 | Os12g0457200 | - | Detail |
| CX12g015426 | 12:13,986,647-13,986,958 | + | - | - | - | - | - | Detail |
| CX12g016379 | 12:13,990,116-13,990,307 | + | - | - | - | - | - | Detail |
| CX12g018094 | 12:14,003,197-14,008,379 | - | C1H12g18821 | C2H12g06376 | LOC_Os12g27254 | Os12g0458100 | - | Detail |
| CX12g017859 | 12:14,036,856-14,039,967 | - | C1H12g02272 | C2H12g06376 | LOC_Os12g27254 | Os12g0458100 | - | Detail |
| CX12g016893 | 12:14,057,249-14,059,631 | - | C1H12g15735 | C2H12g20196 | LOC_Os12g27350 | Os12g0459100 | - | Detail |