| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24567 | 3:5,522,815-5,525,635 | + | C2H3g18755 | CX3g029021 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| C1H3g18611 | 3:5,529,479-5,534,259 | + | C2H3g21216 | CX3g025795 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| C1H3g15471 | 3:5,534,782-5,535,195 | - | C2H3g13077 | CX3g025145 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| C1H3g22547 | 3:5,538,443-5,541,767 | + | C2H3g01791 | CX3g026323 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| C1H3g25970 | 3:5,546,441-5,552,323 | + | C2H3g17874 | CX3g026533 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| C1H3g04450 | 3:5,552,712-5,556,996 | - | C2H3g10730 | CX3g031320 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| C1H3g10632 | 3:5,562,561-5,565,745 | - | C2H3g22152 | CX3g030309 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| C1H3g06308 | 3:5,581,833-5,584,574 | + | C2H3g13924 | CX3g025032 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| C1H3g24825 | 3:5,588,094-5,590,828 | - | C2H3g24481 | CX3g027163 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| C1H3g11590 | 3:5,591,311-5,595,077 | - | C2H3g03285 | CX3g028374 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| C1H3g20877 | 3:5,595,939-5,598,537 | - | C2H3g25818 | CX3g028318 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| C1H3g14036 | 3:5,599,980-5,601,479 | + | C2H3g26156 | CX3g029685 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| C1H3g26472 | 3:5,603,730-5,607,431 | - | C2H3g18310 | CX3g028368 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| C1H3g15777 | 3:5,608,891-5,613,075 | + | C2H3g00756 | CX3g026437 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| C1H3g13535 | 3:5,613,615-5,615,733 | + | C2H3g05450 | CX3g028610 | LOC_Os03g12020 | Os03g0219900 | - | Detail |
| C1H3g10915 | 3:5,621,207-5,623,354 | - | C2H3g23972 | CX3g026270 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| C1H3g01618 | 3:5,643,998-5,646,450 | + | C2H3g23561 | CX3g025137 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| C1H3g06610 | 3:5,647,019-5,654,607 | - | C2H3g25327 | CX3g025281 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| C1H3g09947 | 3:5,657,529-5,661,726 | + | C2H3g25299 | CX3g028100 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| C1H3g29297 | 3:5,664,798-5,667,335 | + | C2H3g19033 | CX3g026372 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g016584 | 12:3,388,201-3,390,695 | + | C1H12g26803 | C2H12g09673 | LOC_Os12g07500 | Os12g0173400 | - | Detail |
| CX12g015255 | 12:3,394,077-3,399,635 | - | C1H12g22841 | C2H12g23734 | LOC_Os12g07450 | Os12g0172500 | - | Detail |
| CX12g017544 | 12:3,403,580-3,403,757 | + | - | - | LOC_Os12g10580 | Os12g0207600 | - | Detail |
| CX12g016945 | 12:3,420,799-3,423,306 | + | C1H12g23026 | C2H12g07326 | LOC_Os12g05700 | Os12g0597300 | - | Detail |
| CX12g016915 | 12:3,445,268-3,446,350 | + | C1H12g20718 | C2H12g19372 | LOC_Os12g07480 | Os12g0173300 | - | Detail |
| CX12g018044 | 12:3,455,790-3,456,050 | - | - | - | - | Os12g0173388 | - | Detail |
| CX12g016050 | 12:3,458,955-3,461,606 | - | C1H12g02920 | C2H12g30484 | LOC_Os12g07500 | Os12g0173400 | - | Detail |
| CX12g015915 | 12:3,462,327-3,467,683 | + | C1H12g26529 | C2H12g29759 | LOC_Os12g07530 | - | - | Detail |
| CX12g015330 | 12:3,470,863-3,475,498 | + | C1H12g02496 | C2H12g09225 | LOC_Os12g07540 | Os12g0174100 | - | Detail |
| CX12g015625 | 12:3,479,374-3,479,715 | - | - | - | LOC_Os12g07550 | Os12g0174200 | - | Detail |
| CX12g017802 | 12:3,492,231-3,492,917 | + | C1H12g19045 | C2H12g07410 | - | Os12g0174300 | - | Detail |
| CX12g017402 | 12:3,503,017-3,503,857 | + | C1H12g09187 | C2H12g28346 | LOC_Os12g07580 | Os12g0174700 | - | Detail |
| CX12g015542 | 12:3,506,032-3,510,950 | - | C1H12g24191 | C2H12g00464 | LOC_Os12g07590 | Os12g0174800 | - | Detail |
| CX12g017555 | 12:3,513,588-3,515,431 | - | C1H12g21338 | C2H12g21638 | LOC_Os12g07610 | Os12g0633501 | - | Detail |
| CX12g017649 | 12:3,541,277-3,542,343 | + | C1H12g21338 | C2H12g23569 | LOC_Os12g07640 | Os12g0175400 | Os2R_MYB94 | Detail |
| CX12g017726 | 12:3,550,061-3,553,729 | - | C1H12g22991 | C2H12g11252 | LOC_Os12g07650 | Os12g0175500 | - | Detail |
| CX12g015326 | 12:3,554,471-3,554,797 | + | C1H12g00864 | C2H12g28545 | LOC_Os08g06840 | - | - | Detail |
| CX12g016511 | 12:3,557,868-3,562,674 | + | C1H12g30297 | C2H12g30577 | LOC_Os12g07670 | Os12g0175700 | - | Detail |
| CX12g017234 | 12:3,563,761-3,566,612 | - | C1H12g05808 | C2H12g06935 | LOC_Os12g07680 | Os12g0175900 | OsRpp30-S | Detail |
| CX12g018441 | 12:3,567,607-3,567,798 | + | - | - | - | Os08g0352400 | - | Detail |