| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g015604 | 12:3,233,493-3,238,479 | - | C1H12g22530 | C2H12g19916 | LOC_Os12g07160 | Os12g0169100 | - | Detail |
| CX12g017400 | 12:3,243,214-3,247,917 | - | C1H12g21208 | C2H12g14104 | LOC_Os12g07190 | Os12g0169400 | - | Detail |
| CX12g016575 | 12:3,257,001-3,258,677 | + | C1H12g22083 | C2H12g13538 | LOC_Os11g07020 | Os12g0169600 | - | Detail |
| CX12g018722 | 12:3,262,182-3,265,313 | + | C1H12g21678 | C2H12g25108 | LOC_Os12g07220 | Os12g0169700 | - | Detail |
| CX12g015571 | 12:3,266,374-3,270,900 | - | C1H12g29035 | C2H12g17009 | LOC_Os12g07230 | Os12g0169800 | OsCPK28 | Detail |
| CX12g018631 | 12:3,276,405-3,279,677 | - | C1H12g16331 | C2H12g13568 | LOC_Os12g07270 | Os12g0170300 | - | Detail |
| CX12g017955 | 12:3,281,604-3,291,349 | - | C1H12g07539 | C2H12g29604 | LOC_Os12g07260 | Os12g0170100 | - | Detail |
| CX12g015888 | 12:3,295,234-3,296,649 | - | - | - | - | Os12g0170500 | - | Detail |
| CX12g017245 | 12:3,297,487-3,300,903 | + | C1H12g00160 | C2H12g22537 | LOC_Os12g07290 | Os12g0170600 | - | Detail |
| CX12g015598 | 12:3,302,342-3,311,360 | + | C1H12g20966 | C2H12g28594 | LOC_Os12g07300 | Os12g0170700 | - | Detail |
| CX12g018577 | 12:3,315,448-3,317,773 | + | C1H12g31083 | C2H12g30320 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| CX12g017511 | 12:3,324,323-3,328,236 | + | C1H12g02404 | C2H12g23442 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| CX12g017364 | 12:3,330,461-3,337,376 | + | C1H12g08123 | C2H12g00108 | LOC_Os12g07350 | Os12g0171200 | - | Detail |
| CX12g016576 | 12:3,338,412-3,338,579 | - | - | - | - | Os12g0568166 | - | Detail |
| CX12g016911 | 12:3,339,622-3,340,128 | - | - | - | - | - | - | Detail |
| CX12g017951 | 12:3,358,505-3,359,009 | - | C1H12g09894 | C2H8g28836 | - | - | - | Detail |
| CX12g015261 | 12:3,363,129-3,370,451 | + | - | C2H12g29500 | - | - | - | Detail |
| CX12g016072 | 12:3,371,649-3,373,811 | - | C1H12g16522 | C2H12g09673 | LOC_Os12g07370 | Os12g0103150 | - | Detail |
| CX12g016774 | 12:3,380,095-3,380,313 | - | - | - | - | Os12g0171500 | - | Detail |
| CX12g017762 | 12:3,386,469-3,386,708 | + | - | - | - | Os12g0584700 | - | Detail |