| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g28916 | 3:32,330,949-32,333,549 | + | C2H3g11545 | CX3g025977 | LOC_Os03g61110 | Os03g0826400 | - | Detail |
| C1H3g22562 | 3:32,333,577-32,338,967 | - | C2H3g21893 | CX3g029605 | LOC_Os03g61120 | Os03g0826500 | OASA1 | Detail |
| C1H3g26880 | 3:32,341,186-32,344,123 | + | C2H3g05353 | CX3g025000 | LOC_Os03g61130 | Os03g0826600 | NPC1, OsNPC1 | Detail |
| C1H3g05534 | 3:32,344,665-32,348,011 | - | C2H3g28499 | CX3g028046 | LOC_Os03g61140 | Os03g0826700 | - | Detail |
| C1H3g12263 | 3:32,349,237-32,350,584 | - | C2H3g14501 | CX3g028016 | LOC_Os03g61160 | Os03g0826800 | - | Detail |
| C1H3g01008 | 3:32,354,515-32,355,501 | - | C2H3g13944 | CX3g027714 | LOC_Os03g61160 | Os03g0826900 | - | Detail |
| C1H3g06986 | 3:32,359,899-32,361,709 | + | C2H3g09376 | CX3g026377 | LOC_Os03g61200 | Os03g0827500 | - | Detail |
| C1H3g22721 | 3:32,361,994-32,362,224 | + | C2H3g26774 | CX3g026377 | LOC_Os03g61200 | Os03g0827500 | - | Detail |
| C1H3g20175 | 3:32,363,169-32,366,428 | - | C2H3g01649 | CX3g026728 | LOC_Os03g61210 | Os03g0827600 | - | Detail |
| C1H3g27004 | 3:32,370,185-32,376,561 | + | C2H3g01744 | CX3g028357 | LOC_Os03g61220 | Os03g0827700 | - | Detail |
| C1H3g05040 | 3:32,395,109-32,399,602 | - | C2H3g15439 | CX3g026752 | LOC_Os03g61290 | Os03g0828600 | - | Detail |
| C1H3g03156 | 3:32,401,688-32,405,296 | - | C2H3g19505 | CX3g028380 | LOC_Os03g61280 | Os03g0828500 | - | Detail |
| C1H3g12556 | 3:32,418,074-32,419,704 | - | C2H3g03283 | CX3g030607 | LOC_Os03g61270 | Os03g0828300 | - | Detail |
| C1H3g04822 | 3:32,425,252-32,426,799 | - | C2H3g18546 | CX3g029024 | LOC_Os03g61260 | Os03g0828100 | OsPRPL18 | Detail |
| C1H3g26131 | 3:32,430,487-32,433,116 | - | C2H3g08381 | CX3g026632 | LOC_Os03g61330 | Os03g0829000 | - | Detail |
| C1H3g15915 | 3:32,433,723-32,436,308 | - | C2H3g25590 | CX3g028011 | LOC_Os03g61340 | Os03g0829100 | - | Detail |
| C1H3g03162 | 3:32,437,093-32,440,281 | - | C2H3g24696 | CX3g026642 | LOC_Os03g61360 | Os03g0829200 | - | Detail |
| C1H3g09916 | 3:32,437,941-32,438,489 | + | C2H3g26698 | CX3g030512 | LOC_Os03g64340 | Os03g0829466 | - | Detail |
| C1H3g07645 | 3:32,447,190-32,447,890 | - | C2H3g04636 | CX3g025854 | LOC_Os03g61470 | Os03g0830200 | OsCNR10 | Detail |
| C1H3g25802 | 3:32,451,427-32,451,741 | - | C2H3g26647 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g015814 | 12:1,909,966-1,911,990 | + | C1H12g08865 | - | LOC_Os12g04770 | Os12g0141800 | - | Detail |
| CX12g017921 | 12:1,919,143-1,921,786 | - | C1H12g04512 | C2H12g13165 | - | Os12g0141900 | - | Detail |
| CX12g016343 | 12:1,965,863-1,966,261 | + | - | - | - | Os11g0526000 | - | Detail |
| CX12g016356 | 12:1,986,722-1,986,943 | + | C1H12g26347 | C2H11g12348 | LOC_Os12g04924 | Os12g0143100 | - | Detail |
| CX12g015488 | 12:1,989,576-1,992,562 | + | C1H12g23605 | C2H12g17505 | LOC_Os12g04930 | Os12g0143200 | OsASHL1 | Detail |
| CX12g015950 | 12:1,993,272-1,994,055 | - | C1H11g20406 | - | LOC_Os11g04935 | Os12g0143300 | - | Detail |
| CX12g018267 | 12:1,994,979-1,995,314 | - | C1H12g20952 | C2H12g04572 | LOC_Os12g04934 | Os12g0143300 | - | Detail |
| CX12g016016 | 12:1,996,904-2,006,236 | - | C1H12g29028 | C2H12g15233 | LOC_Os12g04940 | Os12g0143400 | - | Detail |
| CX12g017195 | 12:2,006,805-2,007,128 | + | C1H12g21714 | C2H12g06061 | LOC_Os12g04650 | Os12g0143750 | - | Detail |
| CX12g017401 | 12:2,015,167-2,015,736 | - | - | - | LOC_Os12g04970 | - | - | Detail |
| CX12g015864 | 12:2,019,369-2,024,445 | - | C1H12g20218 | C2H12g30125 | LOC_Os12g04980 | Os12g0143800 | DMC1A, OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A | Detail |
| CX12g016038 | 12:2,025,907-2,033,161 | + | C1H12g18494 | C2H12g21227 | LOC_Os12g04990 | Os12g0143900 | - | Detail |
| CX12g018054 | 12:2,036,375-2,039,347 | + | C1H12g14180 | C2H12g14580 | LOC_Os12g05000 | Os12g0144000 | - | Detail |
| CX12g015780 | 12:2,042,261-2,045,948 | + | C1H12g00146 | C2H12g26458 | LOC_Os12g05020 | Os12g0144200 | - | Detail |
| CX12g017410 | 12:2,044,086-2,044,295 | - | - | - | - | Os12g0144401 | - | Detail |
| CX12g016324 | 12:2,045,636-2,045,929 | - | - | - | - | Os12g0198800 | - | Detail |
| CX12g018220 | 12:2,060,225-2,062,128 | + | C1H12g05256 | C2H12g10724 | LOC_Os12g05040 | Os12g0144600 | - | Detail |
| CX12g018320 | 12:2,063,788-2,063,937 | + | - | - | - | - | - | Detail |
| CX12g015697 | 12:2,088,887-2,092,034 | - | C1H12g22183 | C2H12g16995 | LOC_Os12g05050 | Os12g0145100 | - | Detail |
| CX12g015693 | 12:2,102,716-2,106,117 | + | C1H12g30331 | C2H12g10193 | LOC_Os12g05080 | Os12g0145400 | - | Detail |