| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12203 | 1:1,433,916-1,434,686 | - | C2H1g16545 | CX1g005405 | - | - | - | Detail |
| C1H1g15246 | 1:1,434,378-1,436,403 | + | C2H1g07174 | - | - | Os01g0131600 | - | Detail |
| C1H1g02133 | 1:1,442,836-1,445,842 | + | C2H1g05018 | CX1g003409 | LOC_Os01g04030 | Os01g0131800 | - | Detail |
| C1H1g08168 | 1:1,446,206-1,446,508 | + | C2H1g20844 | - | - | - | - | Detail |
| C1H1g15335 | 1:1,446,251-1,446,618 | - | C2H1g04580 | CX1g004518 | LOC_Os01g04040 | Os01g0131900 | - | Detail |
| C1H1g16579 | 1:1,448,499-1,449,002 | - | C2H1g05431 | CX1g000794 | LOC_Os01g04050 | Os01g0132000 | - | Detail |
| C1H1g12945 | 1:1,452,792-1,457,386 | + | C2H1g02524 | CX1g001373 | LOC_Os01g04070 | Os01g0132100 | - | Detail |
| C1H1g14509 | 1:1,464,182-1,467,138 | - | C2H1g22548 | CX1g001468 | LOC_Os01g04090 | Os01g0132400 | - | Detail |
| C1H1g11742 | 1:1,472,648-1,473,399 | + | C2H1g29009 | CX1g006344 | LOC_Os01g04100 | Os01g0132500 | - | Detail |
| C1H1g15684 | 1:1,479,815-1,481,666 | - | C2H1g03848 | CX1g005382 | LOC_Os01g04110 | Os01g0132700 | - | Detail |
| C1H1g26304 | 1:1,501,494-1,505,717 | - | C2H1g01357 | CX1g003338 | LOC_Os01g04130 | Os01g0132800 | OsCRS2, CRS2 | Detail |
| C1H1g25093 | 1:1,512,116-1,515,949 | + | C2H1g27153 | CX1g006935 | LOC_Os01g04160 | Os01g0133100 | - | Detail |
| C1H1g00222 | 1:1,520,778-1,531,979 | + | C2H1g09944 | CX1g002370 | LOC_Os01g04190 | Os01g0133400 | OspGlcT1 | Detail |
| C1H1g18877 | 1:1,533,346-1,534,714 | + | C2H1g25293 | CX1g004995 | LOC_Os01g04210 | Os01g0133600 | - | Detail |
| C1H1g05286 | 1:1,538,596-1,540,317 | + | C2H1g22644 | CX1g006533 | LOC_Os01g04220 | Os01g0133700 | - | Detail |
| C1H1g27859 | 1:1,541,956-1,544,123 | + | C2H1g03551 | CX1g002225 | LOC_Os01g04230 | Os01g0133900 | - | Detail |
| C1H1g26351 | 1:1,558,608-1,562,381 | + | C2H1g29327 | CX1g006646 | LOC_Os01g04260 | Os01g0134500 | - | Detail |
| C1H1g03192 | 1:1,572,602-1,574,485 | + | C2H1g24695 | CX1g006565 | LOC_Os01g04280 | Os01g0134700 | - | Detail |
| C1H1g21390 | 1:1,577,753-1,580,523 | - | C2H1g28679 | CX1g007193 | LOC_Os01g04290 | Os01g0134800 | - | Detail |
| C1H1g29863 | 1:1,583,684-1,585,953 | - | C2H1g27423 | CX1g006983 | LOC_Os01g04300 | Os01g0134900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX12g015814 | 12:1,909,966-1,911,990 | + | C1H12g08865 | - | LOC_Os12g04770 | Os12g0141800 | - | Detail |
| CX12g017921 | 12:1,919,143-1,921,786 | - | C1H12g04512 | C2H12g13165 | - | Os12g0141900 | - | Detail |
| CX12g016343 | 12:1,965,863-1,966,261 | + | - | - | - | Os11g0526000 | - | Detail |
| CX12g016356 | 12:1,986,722-1,986,943 | + | C1H12g26347 | C2H11g12348 | LOC_Os12g04924 | Os12g0143100 | - | Detail |
| CX12g015488 | 12:1,989,576-1,992,562 | + | C1H12g23605 | C2H12g17505 | LOC_Os12g04930 | Os12g0143200 | OsASHL1 | Detail |
| CX12g015950 | 12:1,993,272-1,994,055 | - | C1H11g20406 | - | LOC_Os11g04935 | Os12g0143300 | - | Detail |
| CX12g018267 | 12:1,994,979-1,995,314 | - | C1H12g20952 | C2H12g04572 | LOC_Os12g04934 | Os12g0143300 | - | Detail |
| CX12g016016 | 12:1,996,904-2,006,236 | - | C1H12g29028 | C2H12g15233 | LOC_Os12g04940 | Os12g0143400 | - | Detail |
| CX12g017195 | 12:2,006,805-2,007,128 | + | C1H12g21714 | C2H12g06061 | LOC_Os12g04650 | Os12g0143750 | - | Detail |
| CX12g017401 | 12:2,015,167-2,015,736 | - | - | - | LOC_Os12g04970 | - | - | Detail |
| CX12g015864 | 12:2,019,369-2,024,445 | - | C1H12g20218 | C2H12g30125 | LOC_Os12g04980 | Os12g0143800 | DMC1A, OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A | Detail |
| CX12g016038 | 12:2,025,907-2,033,161 | + | C1H12g18494 | C2H12g21227 | LOC_Os12g04990 | Os12g0143900 | - | Detail |
| CX12g018054 | 12:2,036,375-2,039,347 | + | C1H12g14180 | C2H12g14580 | LOC_Os12g05000 | Os12g0144000 | - | Detail |
| CX12g015780 | 12:2,042,261-2,045,948 | + | C1H12g00146 | C2H12g26458 | LOC_Os12g05020 | Os12g0144200 | - | Detail |
| CX12g017410 | 12:2,044,086-2,044,295 | - | - | - | - | Os12g0144401 | - | Detail |
| CX12g016324 | 12:2,045,636-2,045,929 | - | - | - | - | Os12g0198800 | - | Detail |
| CX12g018220 | 12:2,060,225-2,062,128 | + | C1H12g05256 | C2H12g10724 | LOC_Os12g05040 | Os12g0144600 | - | Detail |
| CX12g018320 | 12:2,063,788-2,063,937 | + | - | - | - | - | - | Detail |
| CX12g015697 | 12:2,088,887-2,092,034 | - | C1H12g22183 | C2H12g16995 | LOC_Os12g05050 | Os12g0145100 | - | Detail |
| CX12g015693 | 12:2,102,716-2,106,117 | + | C1H12g30331 | C2H12g10193 | LOC_Os12g05080 | Os12g0145400 | - | Detail |