| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX11g011290 | 11:25,329,092-25,331,751 | - | C1H11g31084 | C2H11g21517 | LOC_Os11g47970 | Os11g0707050 | - | Detail |
| CX11g012497 | 11:25,338,445-25,338,627 | + | - | - | - | - | - | Detail |
| CX11g014838 | 11:25,344,167-25,344,904 | - | - | C2H11g01082 | LOC_Os11g48000 | Os11g0707300 | - | Detail |
| CX11g012157 | 11:25,349,377-25,349,673 | - | - | - | - | Os11g0707450 | - | Detail |
| CX11g011108 | 11:25,350,669-25,353,686 | - | C1H11g10083 | C2H11g25497 | LOC_Os11g48020 | Os11g0707600 | - | Detail |
| CX11g012815 | 11:25,360,229-25,360,622 | - | C1H11g24803 | C2H11g23789 | LOC_Os11g48030 | Os11g0707700 | - | Detail |
| CX11g011522 | 11:25,361,573-25,364,774 | + | C1H11g00342 | C2H11g18637 | LOC_Os11g48040 | Os11g0707800 | OsUCP2 | Detail |
| CX11g011874 | 11:25,365,731-25,367,089 | - | C1H11g16309 | - | LOC_Os11g48050 | Os11g0707900 | - | Detail |
| CX11g014798 | 11:25,373,850-25,376,418 | + | C1H11g07178 | C2H11g16826 | LOC_Os11g48060 | Os11g0708100 | - | Detail |
| CX11g014155 | 11:25,377,387-25,377,983 | - | - | - | - | Os11g0708000 | - | Detail |
| CX11g013159 | 11:25,382,610-25,384,861 | + | C1H11g08651 | C2H11g30672 | LOC_Os11g48070 | Os11g0708400 | - | Detail |
| CX11g012727 | 11:25,387,567-25,388,322 | + | C1H10g01786 | C2H11g26751 | LOC_Os11g48080 | Os11g0708500 | OsPDX1.3 | Detail |
| CX11g013309 | 11:25,389,145-25,389,521 | + | - | - | - | - | - | Detail |
| CX11g012342 | 11:25,391,469-25,401,831 | - | C1H11g11341 | C2H11g05320 | LOC_Os11g48090 | Os11g0708600 | - | Detail |
| CX12g015037 | 12:16,787-17,059 | - | - | - | - | Os09g0276600 | - | Detail |
| CX12g018365 | 12:23,616-23,816 | - | - | - | - | - | - | Detail |
| CX12g015240 | 12:31,012-32,776 | - | C1H12g22609 | - | - | - | - | Detail |
| CX12g015411 | 12:35,062-36,129 | - | C1H12g21021 | C2H12g20675 | - | - | - | Detail |
| CX12g017379 | 12:37,264-41,700 | + | C1H12g08161 | C2H12g23164 | - | - | - | Detail |
| CX12g017565 | 12:47,237-57,931 | - | C1H12g25598 | C2H12g19296 | - | - | - | Detail |